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Record W3198409310 · doi:10.15252/embj.2020107264

Photoreceptor nanotubes mediate the in vivo exchange of intracellular material

2021· article· en· W3198409310 on OpenAlexafffund
Arturo Ortín-Martínez, Nicole Yan, En Leh Samuel Tsai, Lacrimioara Comanita, Akshay Gurdita, Nobuhiko Tachibana, Zhongda C. Liu, Suying Lü, Parnian Dolati, Nenad T. Pokrajac, Ahmed El‐Sehemy, Philip E. B. Nickerson, Carol Schuurmans, Rod Bremner, Valerie A. Wallace

Bibliographic record

VenueThe EMBO Journal · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRetinal Development and Disorders
Canadian institutionsSinai Health SystemSunnybrook HospitalLunenfeld-Tanenbaum Research InstituteMount Sinai HospitalUniversity of TorontoUniversity Health Network
FundersNatural Sciences and Engineering Research Council of CanadaCanada Research ChairsCanada First Research Excellence FundOntario Institute for Regenerative MedicineKrembil FoundationUniversity of Toronto
KeywordsBiologyIntracellularCell biologyOrganelleCellTransplantationIn vivoMicrotubuleGenetics

Abstract

fetched live from OpenAlex

Emerging evidence suggests that intracellular molecules and organelles transfer between cells during embryonic development, tissue homeostasis and disease. We and others recently showed that transplanted and host photoreceptors engage in bidirectional transfer of intracellular material in the recipient retina, a process termed material transfer (MT). We used cell transplantation, advanced tissue imaging approaches, genetic and pharmacologic interventions and primary cell culture to characterize and elucidate the mechanism of MT. We show that MT correlates with donor cell persistence and the accumulation of donor‐derived proteins, mitochondria and transcripts in acceptor cells in vivo. MT requires cell contact in vitro and is associated with the formation of stable microtubule‐containing protrusions, termed photoreceptor nanotubes (PhNTs), that connect donor and host cells in vivo and in vitro. PhNTs mediate GFP transfer between connected cells in vitro. Furthermore, interfering with PhNT outgrowth by targeting Rho GTPase‐dependent actin remodelling inhibits MT in vivo. Collectively, our observations provide evidence for horizontal exchange of intracellular material via nanotube‐like connections between neurons in vivo. Transplanted photoreceptors extend cellular protrusions that contact host photoreceptors and mediate the transfer of transcripts, protein, and mitochondria. The understanding of this phenomenon could transform the cell based therapeutical strategy for certain types of retinal degeneration. Bidirectional transfer of mRNAs, proteins, and mitochondria between transplanted and host retinal cells involves direct contact and formation of microtubule‐based connections between cells.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.217
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations87
Published2021
Admission routes2
Has abstractyes

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Same venueThe EMBO JournalSame topicRetinal Development and DisordersFrench-language works237,207