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Record W3200133032 · doi:10.1007/s13225-021-00482-w

Contribution to rust flora in China I, tremendous diversity from natural reserves and parks

2021· article· en· W3200133032 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueFungal Diversity · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicYeasts and Rust Fungi Studies
Canadian institutionsUniversity of British Columbia
FundersNational Key Research and Development Program of ChinaState Key Laboratory of Microbial ResourcesChina National Funds for Distinguished Young ScientistsNational Natural Science Foundation of China
KeywordsBiologyRubusPhylogenetic treeFlora (microbiology)Phylogenetic diversityBotanyMycologyChinaBiodiversityBasidiomycotaNature reserveEcologyZoologyGeographyArchaeology

Abstract

fetched live from OpenAlex

Rust fungi taxonomically belonging to Pucciniales ( Basidiomycota ) are important phytopathogens that cause many significant diseases to agricultural crops and forest trees. Hitherto, ca. 8000 and 1200 species have been reported from worldwide and China, respectively. To investigate and document the diversity of rust fungi in China, we have sampled from 86 natural reserves and national parks in the past several years, and 6627 specimens have been collected. Our identification using both morphological and molecular data assigned 1654 collections to 337 species in 43 genera of 15 families, as cataloged in this paper. Among them, 34 new species are formally described based on their morphological distinctions and phylogenetic relationships. In addition, three new families Endoraeciaceae , Neophysopellaceae and Uromycladiaceae are proposed based on their morphological distinctions, phylogenetic independences and divergent times. Considering the traditionally morphologically defined families in Pucciniales have been increasing revealed to be discordant with phylogenetic groupings, taxonomic revisions are needed in future study to establish a natural classification system in Pucciniales. We also discussed the importance of morphologies in spermogonia and aecia for the delimitation of Puccinia and related genera. This study presents a significant contribution to the knowledge of rust flora in China. Taxonomic novelties: new families: Endoraeciaceae P. Zhao & L. Cai; Neophysopellaceae P. Zhao & L. Cai; Uromycladiaceae P. Zhao & L. Cai; new species: Chrysomyxa jinghongensis P. Zhao & L. Cai; Coleosporium sichuanense P. Zhao & L. Cai; Coleosporium smilacis P. Zhao & L. Cai; Cystopsora yunnanense P. Zhao & L. Cai; Gerwasia guanganensis P. Zhao & L. Cai; Gerwasia rubus-playfairianus P. Zhao & L. Cai; Hamaspora rubus-pirifolius P. Zhao & L. Cai; Macruropyxis guizhouensis P. Zhao & L. Cai; Macruropyxis paederiae P. Zhao & L. Cai; Melampsora hyperici-sampsonii P. Zhao & L. Cai; Melampsora linearis P. Zhao & L. Cai; Melampsora salicis-delavayanae P. Zhao & L. Cai; Neophysopella vitis-davidii P. Zhao & L. Cai; Phakopsora sophorae P. Zhao & L. Cai; Phragmidium nonapiculatum P. Zhao & L. Cai; Phragmidium kanas P. Zhao & L. Cai; Phragmidium duchesneae-indicae P. Zhao & L. Cai; Pileolaria medogensis P. Zhao & L. Cai; Puccinia amygdalus-iridis P. Zhao & L. Cai; Puccinia aphananthe-aspera P. Zhao & L. Cai; Puccinia microsorus P. Zhao & L. Cai; Puccinia nandina-domestica P. Zhao & L. Cai; Puccinia persicaria-odorata P. Zhao & L. Cai; Puccinia polygonum-aviculare P. Zhao & L. Cai; Puccinia pulverulentus P. Zhao & L. Cai; Puccinia saposhnikoviae P. Zhao & L. Cai; Puccinia sonchus-oleraceus P. Zhao & L. Cai; Puccinia thalictrum-finetii P. Zhao & L. Cai; Puccinia thalictrum-minus P. Zhao & L. Cai; Puccinia xingwenensis P. Zhao & L. Cai; Puccinia xinjiangensis P. Zhao & L. Cai; Puccinia zanthoxyli-chinensis P. Zhao & L. Cai; Uromyces aconiticola P. Zhao & L. Cai; Uromycladium yunnanense P. Zhao & L. Cai; new combinations: Chrysomyxa purpurea (C.J. You & J. Cao) P. Zhao & L. Cai; Neophysopella verannonae (Beenken) P. Zhao & L. Cai.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.429

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.003
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.214
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it