MétaCan
Menu
← Back to cohort
Record W3201410070 · doi:10.48550/arxiv.2109.06346

Physics Driven Domain Specific Transporter Framework with Attention Mechanism for Ultrasound Imaging

2021· preprint· en· W3201410070 on OpenAlexaff
Arpan Tripathi, Mahesh Raveendranatha Panicker, Jack Zhang, Naveenjyote Boora, Jessica Knight, Jacob L. Jaremko, Yale Tung‐Chen, Kiran Vishnu Narayan, Chandrasekharan Kesavadas

Bibliographic record

VenuearXiv (Cornell University) · 2021
Typepreprint
Languageen
FieldMedicine
TopicMedical Imaging Techniques and Applications
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsMechanism (biology)Domain (mathematical analysis)TransporterUltrasound imagingUltrasoundNanotechnologyComputational biologyBiophysicsComputer sciencePhysicsNeuroscienceChemistryPsychologyMaterials scienceBiologyBiochemistryMathematicsAcousticsGene

Abstract

fetched live from OpenAlex

Most applications of deep learning techniques in medical imaging are supervised and require a large number of labeled data which is expensive and requires many hours of careful annotation by experts. In this paper, we propose an unsupervised, physics driven domain specific transporter framework with an attention mechanism to identify relevant key points with applications in ultrasound imaging. The proposed framework identifies key points that provide a concise geometric representation highlighting regions with high structural variation in ultrasound videos. We incorporate physics driven domain specific information as a feature probability map and use the radon transform to highlight features in specific orientations. The proposed framework has been trained on130 Lung ultrasound (LUS) videos and 113 Wrist ultrasound (WUS) videos and validated on 100 Lung ultrasound (LUS) videos and 58 Wrist ultrasound (WUS) videos acquired from multiple centers across the globe. Images from both datasets were independently assessed by experts to identify clinically relevant features such as A-lines, B-lines and pleura from LUS and radial metaphysis, radial epiphysis and carpal bones from WUS videos. The key points detected from both datasets showed high sensitivity (LUS = 99\% , WUS = 74\%) in detecting the image landmarks identified by experts. Also, on employing for classification of the given lung image into normal and abnormal classes, the proposed approach, even with no prior training, achieved an average accuracy of 97\% and an average F1-score of 95\% respectively on the task of co-classification with 3 fold cross-validation. With the purely unsupervised nature of the proposed approach, we expect the key point detection approach to increase the applicability of ultrasound in various examination performed in emergency and point of care.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.006
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0020.001
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.050
GPT teacher head0.219
Teacher spread0.170 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

Explore more

Same venuearXiv (Cornell University)→Same topicMedical Imaging Techniques and Applications→French-language works237,207→