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Record W3203840087 · doi:10.1093/jalm/jfab116

Use of Computer-Aided Immunofluorescence Microscopy (CAIFM) for Interpretation of Antinuclear Antibody (ANA) Pattern and Titer

2021· article· en· W3203840087 on OpenAlexaff
Jennifer Taher, Megan Spencer, Paul S. F. Yip

Bibliographic record

VenueThe Journal of Applied Laboratory Medicine · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDiabetes and associated disorders
Canadian institutionsHealth Sciences CentreUniversity Health NetworkUniversity of TorontoSunnybrook Health Science CentreMount Sinai Hospital
Fundersnot available
KeywordsAnti-nuclear antibodyTiterGold standard (test)AutoantibodyIndirect immunofluorescenceImmunofluorescenceAutomationSerial dilutionMedical diagnosisPattern recognition (psychology)Computer scienceArtificial intelligenceMedicineImmunologyPathologyAntibodyEngineeringInternal medicine

Abstract

fetched live from OpenAlex

The assessment of antinuclear antibodies (ANA) by indirect immunofluorescence (IFA) allows detection of >50 characteristic autoantibodies, making it a highly sensitive method and screening test. The semiquantitative method is based on the identification of patterns at different dilutions, and each fluorescent pattern identified correlates with antibodies suggestive of autoimmune diseases. Despite being recommended as gold standard method by the American College of Rheumatology (1), IFA has unfavorable features including the need for expert morphologists, variable degree of positive titer dilution, subjectivity of pattern interpretation, and is labor intensive. To address these limitations, instrument vendors have now applied automation to the IFA technique for both the liquid handling and image interpretation. The use of automation reduces the intra- and interlaboratory variability, allows for higher throughput, and is potentially cost-effective. Currently, automation for image interpretation is present on 7 commercial systems (2), which have a range of capabilities...

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0030.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.255
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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