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Automatic Detection of Necrotizing Fasciitis: A Dataset and Early Results

2021· article· en· W3206536276 on OpenAlexafffund
Anik Das, Sumaiya Amin, James Alexander Hughes

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldMedicine
TopicStreptococcal Infections and Treatments
Canadian institutionsSt. Francis Xavier University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsFasciitisArtificial intelligenceComputer scienceConvolutional neural networkRaw dataObject detectionIntersection (aeronautics)Training setPattern recognition (psychology)F1 scoreMedicineRadiologyCartography

Abstract

fetched live from OpenAlex

Necrotizing Fasciitis (NF), or Necrotizing Soft-Tissue Infection (NSTI), is a rare infection that poses a significant threat to health. In the absence of a proper diagnosis, the infection can spread rapidly causing extensive tissue necrosis and death - mortality rate of 20% - 35%. Due to inadequate resources, little progress has been made for the automatic detection of NF. We have prepared a novel dataset containing images of affected human organs by NF using an internet image search. The dataset contains 693 images in total, containing raw, augmented, and non-NF images. A system has been developed for performing automated detection of NF with an Artificial Neural Network. We have evaluated the YOLOv3 object recognition model for five arrangements of our dataset and compared the performance for these different data arrangements after running each five times. The datasets were split into 80% train data and 20% test data, and for performance measures, we have taken into account the evaluation metrics: Intersection over Union (IoU) and Average Precision (AP). We obtained the highest average AP score of 57.97% for the dataset with raw data and augmentation and the highest average IoU score of 61.94% for dataset with raw data, augmentation, and negative images. The initial finding of this work can be further improved and become a substantial contribution to clinical arrangements for the diagnosis and management of NF.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score0.021

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.003
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.295
Teacher spread0.272 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2021
Admission routes2
Has abstractyes

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