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Record W3206807852 · doi:10.21105/joss.03669

TE-dependent analysis of multi-echo fMRI with tedana

2021· article· en· W3206807852 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueThe Journal of Open Source Software · 2021
Typearticle
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsMcGill University
FundersNational Institute of Mental HealthEngineering and Physical Sciences Research CouncilNational Institutes of HealthAlan Turing Institute
KeywordsEcho (communications protocol)PsychologyNuclear magnetic resonanceNeuroscienceComputer sciencePhysicsComputer security

Abstract

fetched live from OpenAlex

Functional magnetic resonance imaging (fMRI) is a popular method for in vivo neuroimaging. Modern fMRI sequences are often weighted towards the blood oxygen level dependent (BOLD) signal, which is closely linked to neuronal activity This weighting is achieved by tuning several parameters to increase the BOLD-weighted signal contrast. One such parameter is "TE," or echo time. TE is the amount of time elapsed between when protons are excited (the MRI signal source) and measured. Although the total measured signal magnitude decays with echo time, BOLD sensitivity increases The optimal TE maximizes the BOLD signal weighting based on a number of factors, including several MRI scanner parameters (e.g., field strength), imaged tissue composition (e.g., grey vs. white matter), and proximity to air-tissue boundaries.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.008
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.530
Threshold uncertainty score0.942

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.008
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.053
GPT teacher head0.304
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it