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The Ying And Yang Of Antibiotic Discovery And Resistance

2016· article· en· W3207784675 on OpenAlexafffundabout
Gerry Wright

Bibliographic record

VenueThe FASEB Journal · 2016
Typearticle
Languageen
FieldImmunology and Microbiology
TopicAntibiotic Use and Resistance
Canadian institutionsMcMaster University
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health Research
KeywordsAntibioticsAntibiotic resistanceDrug discoveryResistance (ecology)AntimicrobialDrug resistanceBiotechnologyBiologyComputational biologyMicrobiologyBioinformaticsEcology

Abstract

fetched live from OpenAlex

Resistance to antibiotics is ancient and pervasive in the microbial world. The presence of resistance elements in the genomes of virtually all bacteria and their ability to circulate across genera presents a daunting challenge to the drug discovery sector. The tension between antibiotic discovery and resistance must be managed in order to maintain an ability to produce new drugs and antimicrobial regimens needed by medicine. By harnessing our understanding of the natural history of antibiotic biosynthesis and resistance we can direct efforts to identify candidates for new drugs. One such approach is through applying resistance as a filter to identify microbes that produce known classes of antibiotics. Another is to target resistance itself to find potential co‐drugs that can be used in combination with antibiotics. We have develop a cell‐based platform that can be applied in both strategies. Using this approach, we have identified new inhibitors of resistance and producers of new and rare antibiotics. Support or Funding Information This work is supported by the Canadian Institutes of Health Research and the Natural Sciences and Engineering Research Council of Canada.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.008
Threshold uncertainty score0.026

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0010.010
Scholarly communication0.0040.005
Open science0.0010.004
Research integrity0.0020.005
Insufficient payload (model declined to judge)0.0080.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.212
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes3
Has abstractyes

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