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Record W3209908396 · doi:10.1073/pnas.2106022118

Demonstration of the role of cell wall homeostasis in <i>Staphylococcus aureus</i> growth and the action of bactericidal antibiotics

2021· article· en· W3209908396 on OpenAlexaff
Bartłomiej Salamaga, Ling‐Yuan Kong, Laia Pasquina-Lemonche, Lucía Lafage, Milena L. von und zur Muhlen, Josie F. Gibson, Danyil Grybchuk, Amy K. Tooke, Viralkumar V. Panchal, Elizabeth Culp, Elizabeth Tatham, Mary E. O’Kane, Thomas E. Catley, Stephen A. Renshaw, Gerard D. Wright, Pavel Plevka, Per A. Bullough, Aidong Han, Jamie K. Hobbs, Simon J. Foster

Bibliographic record

VenueProceedings of the National Academy of Sciences · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacterial Genetics and Biotechnology
Canadian institutionsMcMaster University
FundersBiotechnology and Biological Sciences Research CouncilMedical Research CouncilDirectorate for Biological SciencesEngineering and Physical Sciences Research CouncilChina Scholarship CouncilResearch Councils UKNational Natural Science Foundation of ChinaWellcome TrustUK Research and InnovationNational Science Foundation
KeywordsPeptidoglycanAntibioticsStaphylococcus aureusMicrobiologyBacterial cell structureCell wallCell divisionBiologyBacteriaVancomycinCell biologyCellBiochemistryGenetics

Abstract

fetched live from OpenAlex

Significance The bacterial cell wall peptidoglycan is essential for maintenance of viability and yet is dynamic, permitting growth and division. Peptidoglycan synthesis is inhibited by important antibiotics, including β-lactams and vancomycin. Using the human pathogen Staphylococcus aureus , we have examined peptidoglycan homeostatic mechanisms and how their interruption leads to cell death. This has revealed two antibiotic-induced killing mechanisms mediated by specific peptidoglycan hydrolases, both involving the appearance of holes that span the entire thickness of the cell wall. One of the mechanisms is associated with growth and the other with cell division. This study supports a simple model for how cells grow via a combination of peptidoglycan synthesis and hydrolysis and how antibiotic intervention leads to cell death.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.037
Threshold uncertainty score0.379

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.239
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations64
Published2021
Admission routes1
Has abstractyes

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