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Record W3210306003 · doi:10.1093/biosci/biab099

Coding for Life: Designing a Platform for Projecting and Protecting Global Biodiversity

2021· article· en· W3210306003 on OpenAlexafffund
Mark C. Urban, Justin M. J. Travis, Damaris Zurell, Patrick L. Thompson, Nicholas W. Synes, Alice Scarpa, Pedro R. Peres‐Neto, Anne‐Kathleen Malchow, Patrick M. A. James, Dominique Gravel, Luc De Meester, Calum Brown, Greta Bocedi, Cécile H. Albert, Andrew Gonzalez, Andrew P. Hendry

Bibliographic record

VenueBioScience · 2021
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsMcGill UniversityUniversité de SherbrookeUniversity of TorontoConcordia UniversityOkanagan University CollegeUniversity of British Columbia, Okanagan CampusUniversity of British Columbia
FundersLeibniz-GemeinschaftDirectorate for Biological SciencesLeibniz-Institut für Gewässerökologie und BinnenfischereiUniversity of British ColumbiaCentre National de la Recherche ScientifiqueUniversité de SherbrookeUniversity of TorontoConcordia UniversityDeutsche ForschungsgemeinschaftUniversity of AberdeenMcGill UniversityUniversität PotsdamKU LeuvenFreie Universität BerlinUniversity of ConnecticutNational Science Foundation
KeywordsBiodiversityComputer scienceEnvironmental resource managementBiodiversity conservationRisk analysis (engineering)EcologyBusinessEnvironmental scienceBiology

Abstract

fetched live from OpenAlex

Abstract Time is running out to limit further devastating losses of biodiversity and nature's contributions to humans. Addressing this crisis requires accurate predictions about which species and ecosystems are most at risk to ensure efficient use of limited conservation and management resources. We review existing biodiversity projection models and discover problematic gaps. Current models usually cannot easily be reconfigured for other species or systems, omit key biological processes, and cannot accommodate feedbacks with Earth system dynamics. To fill these gaps, we envision an adaptable, accessible, and universal biodiversity modeling platform that can project essential biodiversity variables, explore the implications of divergent socioeconomic scenarios, and compare conservation and management strategies. We design a roadmap for implementing this vision and demonstrate that building this biodiversity forecasting platform is possible and practical.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.015
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.010
Threshold uncertainty score0.031

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.015
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0020.002
Science and technology studies0.0010.002
Scholarly communication0.0040.010
Open science0.0030.006
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0090.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.087
GPT teacher head0.280
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations59
Published2021
Admission routes2
Has abstractyes

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