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Record W3211891397 · doi:10.1101/2021.11.10.468080

Allelopathic effects of <i>Epichloë</i> fungal endophytes: experiment and meta-analysis

2021· preprint· en· W3211891397 on OpenAlexafffund
Heather A. Hager, Maija Gailis, Jonathan A. Newman

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2021
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicPlant and fungal interactions
Canadian institutionsEnvironment and Climate Change CanadaWilfrid Laurier University
FundersUniversity of Guelph
KeywordsAllelopathyBiologyPlant use of endophytic fungi in defenseEpichloëBotanyEndophyteLolium perennePoaceaeSymbiosisGermination

Abstract

fetched live from OpenAlex

Abstract Host-specific Epichloë spp .endophytic fungal symbionts of pooid grasses that produce herbivore-deterring alkaloids and alter the grass host’s metabolite and protein profiles. Early observations suggested that Epichloë may have negative allelopathic effects on neighbouring plant species, particularly Trifolium spp . clovers, but subsequent allelopathy tests produced variable results. We examined two hypotheses: (1) Epichloë strains differ in allelopathic effect, and (2) Epichloë allelopathy negatively affects other plant species. We performed a greenhouse experiment using root exudates from Lolium perenne L. hosting different E. festucae var. lolii (Latch, M.J. Chr. & Samuels) C.W. Bacon & Schardl strains to compare their allelopathic effects on native legumes and forbs. We then used meta-analysis to examine the evidence to date for allelopathic effects of Epichloë endophytes. We found little difference in effect among E. festucae var. lolii strains and very little evidence for negative allelopathic effects of Epichloë in cool-season grasses across a range of methodologies, target plant species, and response measures. Negative allelopathic effects were detected only for root hair measures, which were from a single study. Positive effects on biomass were found for some experimental subgroups, including legumes. However, the majority of response variables showed no evidence for Epichloë allelopathy. Although there is currently little evidence for negative Epichloë allelopathic effects, our meta-analysis identified several research gaps. Experiments testing the functional belowground effects of Epichloë presence may help to determine its effects on non-host plant performance via plant-soil feedbacks.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.015
metaresearch head score (Gemma)0.015
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: Meta-analysis
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.015
Threshold uncertainty score0.079

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0150.015
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0080.030
Bibliometrics0.0020.002
Science and technology studies0.0010.001
Scholarly communication0.0020.001
Open science0.0020.002
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0050.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.221
Teacher spread0.194 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2021
Admission routes2
Has abstractyes

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