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Record W3213068415 · doi:10.1016/j.xgen.2021.100030

GA4GH Passport standard for digital identity and access permissions

2021· article· en· W3213068415 on OpenAlexafffund
Craig Voisin, Mikael Lindén, Stephanie O. M. Dyke, Sarion R. Bowers, Pinar Alper, Maxmillian P. Barkley, David L. Bernick, Jianpeng Chao, Mélanie Courtot, Francis Jeanson, Melissa Konopko, Martin Kuba, Jonathan Lawson, Jaakko Leinonen, Stephanie Li, Vivian Ota Wang, Anthony Philippakis, Kathy Reinold, Gregory A. Rushton, Dylan Spalding, Juha Törnroos, Ilya Tulchinsky, Jaime M. Guidry Auvil, Tommi Nyrönen

Bibliographic record

VenueCell Genomics · 2021
Typearticle
Languageen
FieldMedicine
TopicEthics in Clinical Research
Canadian institutionsOntario GenomicsSystems, Applications & Products in Data Processing (Canada)McGill UniversityGoogle (Canada)
FundersU.S. National Library of MedicineNational Cancer InstituteCanadian Open Neuroscience PlatformHorizon 2020 Framework ProgrammeAcademy of FinlandEuropean Bioinformatics InstituteUniversity of ChicagoHarvard UniversityGoogleBayerNovartisEuropean CommissionBroad InstituteInternational Business Machines CorporationNational Human Genome Research InstituteWellcome TrustIntel Corporation
KeywordsData sharingComputer scienceData accessIdentity managementImplementationWorld Wide WebBig dataData Protection Act 1998Data qualityAccess managementIdentity (music)Data managementAuthentication (law)Computer securityInternet privacyData scienceDatabaseBusinessService (business)

Abstract

fetched live from OpenAlex

The Global Alliance for Genomics and Health (GA4GH) supports international standards that enable a federated data sharing model for the research community while respecting data security, ethical and regulatory frameworks, and data authorization and access processes for sensitive data. The GA4GH Passport standard (Passport) defines a machine-readable digital identity that conveys roles and data access permissions (called "visas") for individual users. Visas are issued by data stewards, including data access committees (DACs) working with public databases, the entities responsible for the quality, integrity, and access arrangements for the datasets in the management of human biomedical data. Passports streamline management of data access rights across data systems by using visas that present a data user's digital identity and permissions across organizations, tools, environments, and services. We describe real-world implementations of the GA4GH Passport standard in use cases from ELIXIR Europe, National Institutes of Health, and the Autism Sharing Initiative. These implementations demonstrate that the Passport standard has provided transparent mechanisms for establishing permissions and authorizing data access across platforms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.032
metaresearch head score (Gemma)0.069
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesOpen science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.995
Threshold uncertainty score0.167

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0320.069
Meta-epidemiology (narrow)0.0010.002
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0040.004
Science and technology studies0.0040.006
Scholarly communication0.0170.014
Open science0.0050.012
Research integrity0.0100.010
Insufficient payload (model declined to judge)0.0220.024

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.465
GPT teacher head0.579
Teacher spread0.114 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations31
Published2021
Admission routes2
Has abstractyes

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