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Record W3214771257 · doi:10.1016/j.ijid.2021.11.040

Emergence of new SARS-CoV-2 Variant of Concern Omicron (B.1.1.529) - highlights Africa's research capabilities, but exposes major knowledge gaps, inequities of vaccine distribution, inadequacies in global COVID-19 response and control efforts

2021· editorial· en· W3214771257 on OpenAlexaff
Eskild Petersen, Francine Ntoumi, David S.C. Hui, Aisha Abubakar, Laura D. Kramer, Christina W. Obiero, Paul Anantharajah Tambyah, Lucille Blumberg, Richard B. Yapi, Seif Al-Abri, Tatiana Castro Abreu Pinto, Dorothy Yeboah‐Manu, Najmul Haider, Danny Asogun, Thirumalaisamy P. Velavan, Nathan Kapata, Matthew Bates, Rashid Ansumana, Chiara Montaldo, Luchenga Adam Mucheleng’anga, John Tembo, Peter Mwaba, Cordelia Himwaze, Muzamil Mahdi Abdel Hamid, Sayoki Mfinanga, Leonard E. G. Mboera, Tajudeen Raj, Eleni Aklillu, Francisco Veas, Sarah Edwards, Pontiano Kaleebu, Timothy D. McHugh, Jeremiah Chakaya, Thomas Nyirenda, Moses J. Bockarie, Peter S. Nyasulu, Christian Wejse, Jean‐Jacques Muyembé‐Tamfum, Esam I. Azhar, Markus Maeurer, Jean B. Nachega, Richard Kock, Giuseppe Ippolito, Alimuddin Zumla

Bibliographic record

VenueInternational Journal of Infectious Diseases · 2021
Typeeditorial
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsInstitute of Infection and Immunity
FundersEuropean and Developing Countries Clinical Trials PartnershipNoguchi Memorial Institute for Medical Research, University of GhanaMedical Research CouncilHorizon 2020 Framework ProgrammeNational Health Laboratory ServiceAarhus UniversitetUniversity of GhanaUniversidade Federal do Rio de JaneiroUniversiteit van AmsterdamUniversity at AlbanyNational University of SingaporeRoyal Veterinary CollegeEuropean Society of Clinical Microbiology and Infectious DiseasesFondation Méditerranée InfectionNational Institute for Health and Care ResearchChinese University of Hong KongAhmadu Bello UniversityWellcome TrustEberhard Karls Universität Tübingen
KeywordsPandemicCoronavirus disease 2019 (COVID-19)Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)2019-20 coronavirus outbreakPublic healthGlobal healthDistribution (mathematics)Political scienceEconomic growthVirologyMedicineInfectious disease (medical specialty)EconomicsOutbreakDisease

Abstract

fetched live from OpenAlex

Nearly two years since the start of the SARS-CoV-2 pandemic, which has caused over 5 million deaths, the world continues to be on high COVID-19 alert. The World Health Organization (WHO), in collaboration with national authorities, public health institutions and scientists have been closely monitoring and assessing the evolution of SARS-CoV-2 since January 2020 (WHO 2021a; WHO 2021b). The emergence of specific SARS-CoV-2 variants were characterised as Variant of Interest (VOI) and Variant of Concern (VOC), to prioritise global monitoring and research, and to inform the ongoing global response to the COVID-19 pandemic. The WHO and its international sequencing networks continuously monitor SARS-CoV-2 mutations and inform countries about any changes that may be needed to respond to the variant, and prevent its spread where feasible.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.026
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Meta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.079
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.026
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0020.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.039
GPT teacher head0.390
Teacher spread0.351 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations195
Published2021
Admission routes1
Has abstractyes

Explore more

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