MétaCan
Menu
Back to cohort

Increased expression of SARS-CoV-2 (Covid-19) adhesion sites on type II pneumocytes, small airway epithelium, and alveolar macrophages in smokers and patients with COPD

2021· article· en· W3216463315 on OpenAlexaff
Samuel James Brake, Wenying Lu, James Markos, Josie Larby, Collin Chia, Greg Haug, Heinrich C. Weber, Kielan Darcy McAlinden, Ashutosh Hardikar, Gurpreet K. Singhera, Tillie‐Louise Hackett, Mathew Suji Eapen, Sukhwinder Singh Sohal

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldMedicine
TopicCongenital Diaphragmatic Hernia Studies
Canadian institutionsSt. Paul's HospitalUniversity of British Columbia
Fundersnot available
KeywordsMedicineCOPDLungImmunostainingRespiratory epitheliumAirwayPathologyImmunohistochemistryInternal medicineGastroenterologySurgery

Abstract

fetched live from OpenAlex

Aim: To perform detailed tissue analysis of SARS-CoV-2 adhesion sites in surgically resected small airway tissue. Methods: This study included 16 patients with COPD, of which 8 were current smokers with COPD (COPD-CS) and 8 ex-smokers with COPD (COPD-ES), 7 normal lung function smokers (NLFS), 9 patients with small airways disease (SAD), and 10 never-smoking normal controls (NC). Immunostaining was performed for ACE2, TMPRSS2, and FURIN. Type II pneumocytes, small airway epithelium (SAE), and alveolar macrophages (AM) were analysed using Image ProPlus 7.0. software. Results: Total number of type II pneumocytes and AM significantly increased in the pathological groups compared to NC (p<0.01), except SAD (p=0.08). Total AM significantly decreased in COPD-ES (p<0.003). ACE2 expression increased in SAE of all the patients compared to NC (p<0.001). ACE2 expressing type II pneumocytes were significantly higher in pathological groups compared to NC (p < 0.003). Similar significant changes were observed for ACE2 positive AM (p < 0.002), except COPD-ES, which had decrease in ACE2 positive AM (p<0.003). ACE2 positive AM and type II pneumocytes showed significant negative correlation with FEF25-75% (p<0.05, p = 0.05). ACE2 positive AM and total AM negatively correlated to DLCO% predicted (p<0.02; p<0.04). A similar staining pattern was observed for TMPRSS2 and FURIN. Conclusion: The increased expression of ACE2 along with TMPRSS2 and FURIN, in the small airways of smokers and COPD patients, provides further evidence that these patient groups could be more susceptible to severe COVID-19 infection.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.287
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2021
Admission routes1
Has abstractyes

Explore more

Same topicCongenital Diaphragmatic Hernia StudiesFrench-language works237,207