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Novel Bcl‐2 Associated Transcription Factor (Btf) Interactions and Regulation of pre‐mRNA Splicing

2007· article· en· W34139491 on OpenAlexaff
Haya Sarras, Laura Tamblyn, John Peter McPherson

Bibliographic record

VenueThe FASEB Journal · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA Research and Splicing
Canadian institutionsCanada Research Chairs
Fundersnot available
KeywordsRNA splicingAlternative splicingSplicing factorSR proteinCell biologyBiologyTranscription factorMessenger RNAGeneticsGeneRNA

Abstract

fetched live from OpenAlex

Previous studies have implicated Bcl‐2 associated transcription factor (Btf) in the regulation of apoptosis (programmed cell death) in vitro through interactions with the Bcl‐2 family proteins. Btf does not share structural similarities with Bcl‐2 members but rather contains tracts of alternating serine/arginine residues, a hallmark of splicing regulators. The exact mechanism whereby Btf exerts its effects is unknown. The goals of my research plan are as follows: To identify and characterize other Btf‐associated partners to clarify the mechanism of action of Btf To determine whether Btf plays a role in the regulation of pre‐mRNA splicing. We screened for Btf‐associated proteins using the yeast two‐hybrid system. Using this strategy I have identified novel interactions between Btf and two proteins that have been previously implicated in pre‐mRNA splicing known as p32 and 9G8. To determine the impact of Btf on alternative splicing, I used a combination of transfection and RT‐PCR techniques to look at the steady‐state mRNAs levels of adenoviral E1A, a well characterized model of alternative splicing in Btf wild‐type and deficient embryonic fibroblasts. Using this approach, Btf appears to act as a negative regulator of splicing. The proposed work has the potential to reveal novel molecular mechanisms whereby developmental cues and external stimuli guide alternative splicing.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.292
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2007
Admission routes1
Has abstractyes

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