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Record W352032093 · doi:10.1096/fasebj.21.6.lb10-a

Characterization of a Novel Scaffold Protein Involved in Skeletal Muscle Differentiation

2007· article· en· W352032093 on OpenAlexaff
Mark Takahashi, Carl Virtanen, James Paris

Bibliographic record

VenueThe FASEB Journal · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPI3K/AKT/mTOR signaling in cancer
Canadian institutionsPrincess Margaret Cancer CentreDiscovery CentreUniversity Health Network
Fundersnot available
KeywordsScaffold proteinC2C12Cell biologyBiologyTranscription factorMEF2CSignal transductionMef2Skeletal muscleCellular differentiationGene knockdownPI3K/AKT/mTOR pathwayMyocyteMyogenesisGeneticsGeneAnatomy

Abstract

fetched live from OpenAlex

The phosphatidylinositol 3‐kinase (PI 3 K) signaling pathway has been associated with a variety of cellular functions, ranging from cell cycle regulation to tissue development. Altered or deviant signaling through this cascade has been associated with a number of cancers and disorders. Although years of research have extensively characterized this signaling pathway, not all aspects of it have been fully elucidated. Here we show a novel plekstrin homology domain containing protein is also involved in this pathway. This protein was identified during a screen of MEF2 transcription factor binding sites during skeletal muscle differentiation. The protein is a well‐conserved, though previously uncharacterized, protein found in a variety of sequenced tetrapods. Association analysis demonstrated that the protein binds specifically to PI 3 K signaling pathway members. In C 2 C 12 myoblast cells prior to differentiation, the protein was localized to the cytosol, migrating to the membrane following initiation of muscle differentiation. Knockdown by RNAi resulted in inhibition of myotube formation. Finally, mRNA levels were found to be differentially regulated across a number of tumour pathologies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.245
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2007
Admission routes1
Has abstractyes

Explore more

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