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Automatic Assessment Of Hip Effusion From MRI

2021· article· en· W4200042343 on OpenAlexaff

Bibliographic record

Venue2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) · 2021
Typearticle
Languageen
FieldMedicine
TopicHip disorders and treatments
Canadian institutionsUniversity of CalgaryUniversity of Alberta
Fundersnot available
KeywordsIntraclass correlationConvolutional neural networkMagnetic resonance imagingEffusionRadiomicsSørensen–Dice coefficient

Abstract

fetched live from OpenAlex

Joint effusion is a hallmark of osteoarthritis (OA) associated with stiffness, and may relate to pain, disability, and long-term outcomes. However, it is difficult to quantify accurately. We propose a new Deep Learning (DL) approach for automatic effusion assessment from Magnetic Resonance Imaging (MRI) using volumetric quantification measures (VQM). We developed a new multiplane ensemble convolutional neural network (CNN) approach for 1) localizing bony anatomy and 2) detecting effusion regions. CNNs were trained on femoral head and effusion regions manually segmented from 3856 images (63 patients). Upon validation on a non-overlapping set of 2040 images (34 patients) DL showed high agreement with ground-truth in terms of Dice score (0.85), sensitivity (0.86) and precision (0.83). Agreement of VQM per-patient was high for DL vs experts in term of Intraclass correlation coefficient (ICC)= 0.88[0.80,0.93]. We expect this technique to reduce inter-observer variability in effusion assessment, reducing expert time and potentially improving the quality of OA care.Clinical Relevance- Our technique for automatic assessment of hip MRI can be used for volumetric measurement of effusion. We expect this to reduce variability in OA biomarker assessment and provide more reliable indicators for disease progression.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.006
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.341
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2021
Admission routes1
Has abstractyes

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