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Predictive Analytics to Support Health Informatics on COVID-19 Data

2021· article· en· W4200138766 on OpenAlexaff
Carson K. Leung, Thanh Huy Daniel, Nguyen Tran, Christine Y. Zhang

Bibliographic record

Venue2021 IEEE 21st International Conference on Bioinformatics and Bioengineering (BIBE) · 2021
Typearticle
Languageen
FieldMedicine
TopicCOVID-19 diagnosis using AI
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsPredictive analyticsComputer scienceAutoencoderInformaticsHealth informaticsAnalyticsHealth careData scienceMachine learningArtificial intelligenceData analysisBig dataData miningCoronavirus disease 2019 (COVID-19)DiseaseDeep learningMedicineInfectious disease (medical specialty)EngineeringPathology

Abstract

fetched live from OpenAlex

Bioinformatics and health informatics-in conjection with data science, data mining and machine learning-have been applied in numerous real-life applications including disease and healthcare analytics, such as predictive analytics of coronavirus disease 2019 (COVID-19). Many of these existing works usually require large volumes of data train the classification and prediction models. However, these data (e.g., computed tomography (CT) scan images, viral/molecular test results) that can be expensive to produce and/or not easily accessible. For instance, partially due to privacy concerns and other factors, the volume of available disease data can be limited. Hence, in this paper, we present a predictive analytics system to support health analytics. Specifically, the system make good use of autoencoder and few-shot learning to train the prediction model with only a few samples of more accessible and less expensive types of data (e.g., serology/antibody test results from blood samples), which helps to support prediction on classification of potential patients (e.g., potential COVID-19 patients). Moreover, the system also provides users (e.g., healthcare providers) with predictions on hospitalization status and clinical outcomes of COVID-19 patients. This provides healthcare administrators and staff with a good estimate on the demand for healthcare support. With this system, users could then focus and provide timely treatment to the true patients, thus preventing them for spreading the disease in the community. The system is helpful, especially for rural areas, when sophisticated equipment (e.g., CT scanners) may be unavailable. Evaluation results on a real-life datasets demonstrate the effectiveness of our digital health system in health analytics, especially in classifying patients and their medical needs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.005
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.009
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0010.000
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.118
GPT teacher head0.377
Teacher spread0.258 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2021
Admission routes1
Has abstractyes

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