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Centroid-based Distance Loss Function for Lamina Segmentation in 3D Ultrasound Spine Volumes

2021· article· en· W4200235518 on OpenAlexafffund

Bibliographic record

Venue2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) · 2021
Typearticle
Languageen
FieldEngineering
TopicMedical Imaging and Analysis
Canadian institutionsUniversity of Alberta
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsCentroidSegmentation3D ultrasoundVoxelScoliosisGround truthConvolutional neural networkUltrasoundArtificial neural network

Abstract

fetched live from OpenAlex

Ultrasound imaging of the spine to diagnose the severity of scoliosis is a recent development in the field, offering 3D information that does not require a complicated procedure of reconstruction, unlike with radiography. Determining the severity of scoliosis on ultrasound volumes requires labelling vertebral features called laminae. To increase accuracy and reduce time spent on this task, this paper reported a novel custom centroid-based distance loss function for lamina segmentation in 3D ultrasound volumes, using convolutional neural networks (CNN). A comparison between the custom and two standard loss functions was performed by fitting a CNN with each loss function. The results showed that the custom loss network performed the best in terms of minimization of the distances between the centroids in the ground truth and the centroids in the predicted segmentation. On average, the custom network improved on the total distance between predicted and true centroids by 33 voxels (22%) when compared with the second best performing network, which used the Dice loss. In general, this novel custom loss function allowed the network to detect two more laminae on average in the lumbar region of the spine that the other networks tended to miss.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.582
Threshold uncertainty score0.656

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.278
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes2
Has abstractyes

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