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Record W4200548335 · doi:10.1016/j.jbi.2021.103978

Multi-view prediction of Alzheimer’s disease progression with end-to-end integrated framework

2021· article· en· W4200548335 on OpenAlexfundno aff
Yan Zhao, Baoqiang Ma, Tongtong Che, Qiongling Li, Debin Zeng, Xuetong Wang, Shuyu Li

Bibliographic record

VenueJournal of Biomedical Informatics · 2021
Typearticle
Languageen
FieldNeuroscience
TopicBrain Tumor Detection and Classification
Canadian institutionsnot available
FundersJohnson and Johnson Pharmaceutical Research and DevelopmentJanssen Research and DevelopmentNational Institute on AgingNational Institute of Biomedical Imaging and BioengineeringCanadian Institutes of Health ResearchUniversity of California, San DiegoGenentechNational Institutes of HealthH. Lundbeck A/SServierNational Natural Science Foundation of ChinaEisaiBeihang UniversityIXICONorthern California Institute for Research and EducationPfizerBiogenBioClinicaUniversity of Southern CaliforniaNovartis Pharmaceuticals CorporationU.S. Department of DefenseEli Lilly and CompanyBristol-Myers SquibbAcademic Excellence Foundation of BUAA for PHD StudentsAlzheimer's Drug Discovery FoundationGE HealthcareAlzheimer's Disease Neuroimaging InitiativeMeso Scale DiagnosticsAbbVieFujirebio EuropeAlzheimer's AssociationFoundation for the National Institutes of Health
KeywordsNeuroimagingAlzheimer's Disease Neuroimaging InitiativeCognitionComputer scienceMagnetic resonance imagingArtificial intelligenceDiseaseMachine learningRegressionDementiaRegion of interestMedicinePsychologyNeurosciencePathologyRadiology

Abstract

fetched live from OpenAlex

Alzheimer's disease is a common neurodegenerative brain disease that affects the elderly population worldwide. Its early automatic detection is vital for early intervention and treatment. A common solution is to perform future cognitive score prediction based on the baseline brain structural magnetic resonance image (MRI), which can directly infer the potential severity of disease. Recently, several studies have modelled disease progression by predicting the future brain MRI that can provide visual information of brain changes over time. Nevertheless, no studies explore the intra correlation of these two solutions, and it is unknown whether the predicted MRI can assist the prediction of cognitive score. Here, instead of independent prediction, we aim to predict disease progression in multi-view, i.e., predicting subject-specific changes of cognitive score and MRI volume concurrently. To achieve this, we propose an end-to-end integrated framework, where a regression model and a generative adversarial network are integrated together and then jointly optimized. Three integration strategies are exploited to unify these two models. Moreover, considering that some brain regions, such as hippocampus and middle temporal gyrus, could change significantly during the disease progression, a region-of-interest (ROI) mask and a ROI loss are introduced into the integrated framework to leverage this anatomical prior knowledge. Experimental results on the longitudinal Alzheimer's Disease Neuroimaging Initiative dataset demonstrated that the integrated framework outperformed the independent regression model for cognitive score prediction. And its performance can be further improved with the ROI loss for both cognitive score and MRI prediction.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.013
Threshold uncertainty score0.026

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.052
GPT teacher head0.321
Teacher spread0.268 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations28
Published2021
Admission routes1
Has abstractno

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