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Record W4205148896 · doi:10.1093/clinchem/hvab198

At-Home Testing for Infectious Diseases: The Laboratory Where You Live

2021· article· en· W4205148896 on OpenAlexaff
Sophonie Jean, Carey‐Ann D. Burnham, Kimberle C. Chapin, Omai B. Garner, Nitika Pant Pai, George Turabelidze, Susan M. Butler‐Wu

Bibliographic record

VenueClinical Chemistry · 2021
Typearticle
Languageen
FieldMedicine
TopicSARS-CoV-2 detection and testing
Canadian institutionsMcGill University
FundersCepheidBioFire Diagnostics
KeywordsMedicineVirology

Abstract

fetched live from OpenAlex

Interest in at-home testing for infectious diseases is growing. The need for at-home testing, specifically for coronavirus disease 2019 (COVID-19), has been hotly debated in the media, but this is not the first time nor the first infectious indication for which at-home testing has been advocated. At-home testing for infectious diseases such as HIV and other sexually transmitted infections is available and has been vigorously debated. Health equity to marginalized communities and reduction of disease transmission are among purported benefits of widespread availability of at-home testing. A number of questions remain regarding at-home test accuracy and the ability to impact patient outcomes and public health while protecting patient privacy. Here, expert clinical microbiologists, physicians, and public health officials weigh in on these outstanding questions with specific emphasis on newly approved at-home tests for COVID-19 during the global pandemic. Susan Butler-Wu: When it comes to at-home COVID-19 testing in the United States, the majority of Emergency Use Authorizations (EUAs) issued by the Food and Drug Administration (FDA) to date involve at-home collection. By definition, at-home collection involves self-collection of a specimen outside of a healthcare setting and then either shipping it to or dropping it off at a designated location, such that it is tested in a CLIA-certified high-complexity laboratory. Some at-home collection tests only have authorization for use by prescription, whereas others have authorization for direct-to-consumer testing, and a prescription is not required. More than 50 authorizations for at-home collection have been issued by the FDA since the beginning of the pandemic, and all involve nucleic-acid amplification tests (NAATs), such as RT-PCR. The number of tests with EUA for at-home COVID-19 testing is far more limited by comparison. Unlike at-home collection, EUAs for at-home testing have been issued for both NAAT and antigen tests. There are currently 2 NAAT-based assays with EUA for at-home testing (at the time of writing), and both use reverse transcription followed by isothermal amplification. Both require the use of manufacturer-provided instrumentation and have EUA for over-the-counter (OTC) testing of symptomatic and asymptomatic individuals. There are currently 3 manufacturers with EUA for at-home antigen testing in the United States: Ellume Limited, Abbott Diagnostics, and the Quidel Corporation. The Ellume COVID-19 Home Test is unique among currently authorized at-home antigen tests in that it includes a Bluetooth connected analyzer that requires use of a smartphone app for test interpretation. In contrast, results of the BinaxNow COVID-19 (Abbott) and QuickVue (Quidel) tests rely on visual inspection for test interpretation. The Ellume test has authorization for OTC testing, while the BinaxNow and QuickVue assays have both OTC and prescription-based offerings. Although all 3 manufacturers’ tests are authorized for symptomatic testing, only the Ellume test is authorized for single testing for asymptomatic screening. In contrast, the EUAs granted for Abbott and Quidel for OTC use specify that serial testing should be performed 1 to 3 days apart for asymptomatic screening, depending on the test. Kimberle Chapin: There has been a rapid evolution for tests to detect severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Initially, all COVID-19 testing involved provider-collected specimens, and all testing was performed in CLIA-certified laboratories. As the pandemic progressed, public health was compromised when the demand for testing was not aligned with the supply. As the unprecedented demand for COVID-19 testing continued, approvals of traditional testing and capacity building, along with the inability to access and be seen by providers coupled with long test report times, created the perfect storm for many suppliers to not only commercialize COVID-19 tests but also develop new ways for patients to access tests and services. Today, several self-collection and home testing options for COVID-19 exist in the United States (as described in the FDA In Vitro Diagnostics EUAs—Molecular Diagnostic Tests for SARS-CoV-2 document). The number of tests and collection options with EUA exploded rapidly and changed in 2 important ways. First was in-home collection (with laboratory-based testing) and next, capitalizing on lack of provider access, was in-home testing. The first testing kits for home were offered by multiple commercial laboratories and were self-collected specimens that were sent to a centralized laboratory; these tests required a prescription and were reimbursable. Now, direct-to-consumer specimen collection kits are available through commercial pharmacies or online vendors (e.g., CVS, Walmart, Amazon). Overall, the home collection laboratory-based tests are amplification-based, provide results in 1 to 2 days and direct reporting to patient and public health, and include customer support, reimbursement guidance, and shipping. Almost all home collections are nasal swab specimens. In-home testing, or OTC testing, is also available, and the kits include all supplies to run the test (e.g., swab, test device, instructions). Collection and testing are authorized for symptomatic and asymptomatic people ≥2 years old, and results are available in 15 to 30 min. Currently, there are 3 antigen tests for at-home use; all detect nucleocapsid protein antigen and are lateral flow assays. Two are visually interpreted, and one uses fluorescent technology that requires a smartphone app for interpretation and result transmission to public health. Importantly, negative predictive value compared to high-complexity RT-PCR has a wide range depending on patient population, clinical presentation, and prevalence of disease. Thus, serial antigen testing every 3 days, or twice per week, is recommended to identify infection in early stages. Specificity is reported to be high. Two loop-mediated isothermal amplification tests are authorized by FDA for OTC use; both target the nucleocapsid region of the viral genome and take less than 1 h to provide results. Nitika Pant Pai: Home COVID-19 tests can be conducted by any intended user (anyone with health literacy) in the comfort of their private space (home or workspace). Home-based COVID-19 test kits may also be self-sample collection tests. For example, the Binax Now Home Test (antigen) in the United States can be performed in self-collected swab specimen in those who meet COVID-19 clinical criteria and/or epidemiological criteria. In the United Kingdom and Germany, rapid antigen home tests have also gathered momentum. Users are encouraged to test themselves and their family members frequently. George Turabelidze: Expanding testing with at-home tests enhances pandemic response at the individual (prompt diagnosis improves person’s disease management and protects close contacts) and the community level (improves disease prevalence estimates, timing of prevention measures, lessens healthcare burden). The key question is whether at-home tests are accurate enough to accomplish those goals. However, even if inferior to conventional tests, the epidemiological concept of at-home testing represents a paradigm shift in disease surveillance from seeking to accurately diagnose a single individual at any given time to a testing regimen that emphasizes capture of infected persons while those persons are most infectious. Future real-world data generated from at-home testing experience will be crucial in confirming validity of this concept. Greater convenience of at-home testing may also help communities with limited access to healthcare, as well as promote testing among people who otherwise might not go to a public testing site. The home testing approach works best when it is done in a serial fashion rather than as a 1-time test. The concern with this is that populations impacted the most by COVID-19 could be unable to afford frequent and serial at-home testing. Reducing the cost while maintaining quality of the product is very important going forward. Nitika Pant Pai: If we examine the health system issues faced in controlling the pandemic response in New York and currently in Delhi and many cities in India, the turnaround time to results with an RT-PCR test is a huge bottleneck. It varies between 1 and 5 days, which is not an effective turnaround time in the setting of acute COVID-19 infection; long turnaround time impedes a rapid initiation of treatment and can lead to a rapid deterioration in the clinical condition of some patients. In the mitigation phase of a pandemic, home tests can play a huge role in self-staging COVID-19 in populations with a certain level of health literacy. These tests can help provide a test result in both the asymptomatic and symptomatic phases of the infection. They can reduce long lines at a facility and anxious delays associated with waiting for a test result. They can help individuals self-triage, stage their COVID-19 infection, and manage their infection at home by monitoring their oxygen saturation levels with a pulse oximeter until they get to the point where they need hospitalization. In India, people are not interested in showing up at free testing centers, for fear of contracting the virus at these super spreader centers. Self-tests help allay fear, minimize the possibility of contracting SARS-CoV-2, and triage moderate/severe COVID-19 cases requiring hospitalization from milder cases that can managed at home. With that, they may ease the burden on many overstretched healthcare systems. This is a welcome relief in a pandemic setting. However, regulatory systems must be ready to approve them with an EUA or honor the EUA from other credible agencies and provide the option to individuals to use them fast enough. In areas where access to healthcare is a concern (such as the mountains of Nepal or rural areas of India), rapid antigen tests have already shown a promising uptake. In such settings, quality-assured self-tests can empower communities to stage their infection in the comfort of their own home. However, self-testers should be assisted by a telemedicine line or remotely supervised by doctors. If perchance their COVID-19 condition deteriorates and they require transportation to a hospital, the system should be ready to accommodate them. Self-tests are useless if they do not inform the next step in care (i.e., linkages to treatment and triage). Omai B. Garner: Appropriate sample collection is critical for accurate test results. Home sample collection needs to be as easy as possible. Because of this, only saliva or anterior nares collection is feasible. Instructions for collection must be clear and easy to follow. Evidence for adequate sample collection within the test kit would be a significant improvement over most OTC tests. Susan Butler-Wu: It is important to note that not all specimen types have equivalent sensitivity for SARS-CoV-2 detection. Nasopharyngeal (NP) specimens are widely considered as the gold standard to which all other specimen types are compared but can only be collected by trained healthcare workers wearing specific personal protective equipment and are relatively uncomfortable for the patient. Home collection can involve a variety of specimen types, depending on what has validated for use with the test system. In some cases this is saliva, while for others it includes midturbinate (also known as deep nasal specimens) or anterior nares swabs. Compared with NP swabs, saliva obtained after coughing, midturbinate swabs, and combined anterior nares and oropharyngeal swabs produce the best results, with several studies showing the latter specimen to have similar sensitivity to NP swabs for laboratory-based NAAT testing. Anterior nares are somewhat less sensitive than these specimen types. The reliability of saliva for SARS-CoV-2 detection can be compromised if collection instructions are not carefully followed. It should also be noted that “saliva” is not a single sample matrix; differences in have been described between saliva specimens collected with coughing, by or by the specimen collection Susan Butler-Wu: There is a of data the of at-home specimen collection and/or testing compared to testing performed in a traditional CLIA-certified In 1 at-home collection of midturbinate nasal swabs for RT-PCR was only sensitive compared to NP swabs for symptomatic patients. This was than the on swab types In contrast, the Ellume Health EUA that and performed in a home setting of for both symptomatic and asymptomatic patients compared to healthcare specimens tested by RT-PCR. the only the of the Health test with laboratory-based NAAT performed with NP swabs. However, all specimens were collected by healthcare and all testing was performed by antigen testing is by the as if it was 1 it is important to note that a of can be between assays. When the of at-home tests and for antigen testing, it is important to between symptomatic testing and asymptomatic screening. This comes to RT-PCR more sensitive for the detection of SARS-CoV-2 than isothermal amplification and For symptomatic viral are within the first of and antigen as viral For symptomatic specimens are more to be if collected and tested the first of The of at-home testing among asymptomatic individuals has been one that has in the and the community Interest in asymptomatic testing from the that asymptomatic and/or transmission is to for a of COVID-19 cases range between and There has been regarding the concept that at-home antigen testing could a or test. This from the that antigen with viral and that viral viral However, it should be noted that the infectious of SARS-CoV-2 and that viral widely between laboratories. a infection of was when cases viral what would be to be by antigen tests compared with when cases viral or of viral was in over of antigen tests in 1 even only of these specimens were viral There to it currently such as an test for Thus, the ability to the of at-home antigen testing for this is studies asymptomatic antigen testing as the public health are However, there are several reported of connected to antigen test results in both the and of The at-home of testing there are that will instructions for use or take on the test results they Kimberle Chapin: data between are not that may the predictive value of the test include the stage of the prevalence in the and whether the test is for or a RT-PCR test for COVID-19 with an NP swab has performed best in most studies for people who were in all phases of early in For home testing, a clear by the of the test is result and next are critical for For example, in a with with a negative home test should a test at a CLIA-certified while a home test should a to their and provider reporting to public health. Kimberle Chapin: The only self-collected infectious disease test that is in the United States is the HIV test for and The test is a lateral flow that uses a self-collected swab that is to the The test requires visual interpretation of and test lines and to The OTC test was available in and the to as an OTC test was to not only for testing but also for and care for with results. The is user clear instructions next (e.g., that a test must be The COVID-19 tests not the that of public health needs created by the pandemic and an of to by the However, many of the we for testing (e.g., patient care and to results in for if performed at home where a may not have to a healthcare setting are clear currently in from COVID-19 test systems is the of quality for patient testing, not only test by the but also for the over reporting quality of results in specific settings, and for the patient. Nitika Pant Pai: The HIV gathered with the FDA of the home test for HIV in a self-tests are either approved for Health or on the These include both self-tests and saliva In by HIV sexually transmitted infection self-sample collection kits are also in Although self-tests are not available for any other sexually transmitted infection self-collection of has generated credible for is in the while for and will the for ways to these infections in Omai B. Garner: in to at-home test results is a very to patients the results and or a healthcare negative results patients to public health on and to at-home testing is on a George Turabelidze: The for many people will in a but we may some as As in at-home test should be a the to a negative test result should not be as a to prevention one of The home test could have been and a negative test not an individual be public would be that at-home testing by is not a for personal in public health the public get and of home testing when there will be interpretation of any test requires of and the person’s specific at-home testing may not result in a the could be with a healthcare provider and/or public health will need to to this on of the or negative result. For example, symptomatic people to COVID-19 who have a negative home antigen test may need a test. results in asymptomatic individuals are less accurate and will need by more accurate test or testing. people test that some patients do not take as to instructions for home testing is also for home testing. Nitika Pant Pai: In the of the of and use of in is in clinical Some By and one can manage of HIV In the of of home tests may people take a test It might lead to in of and of transmission to and could The will be on the people to and their to of self-tests will be a step up from and and With levels in we of SARS-CoV-2 in the newly or a In such tests will in when a is with a and are not available an in the infectious first of It the of and from then the in this Omai B. Garner: At-home testing is performed by the but if the results of the at-home test are transmitted to a healthcare would have to be in to that the results are only transmitted to healthcare involved in the It would be important to the from George Turabelidze: There are multiple ways of and reporting at-home tests. on personal data issues is and do not we have issues for every In those manufacturers who with as of the testing are required to have for the personal data collection and If a person’s test result is reported by the healthcare provider or reported by persons themselves to the public health that with will be followed. Kimberle Chapin: tests with results to public health, both and performed in laboratories are the of the where the tests are This to all laboratories (e.g., or and reporting for example, sexually transmitted and For all at-home collection kits where the specimen is sent to a for testing, the is for this and it is on their that results will be However, this reporting varies for the at-home test kits available to the this on the or the test The could be to have a for this as of the to FDA and/or use a provider (e.g., for the reporting as well as any issues to the testing and interpretation. It should be known to the that diseases with significant public health such as will be George Turabelidze: There is an important between the 2 types of at-home tests. In 1 of at-home the and the sample to a the The test test results to the as well as public health as required by the FDA authorization of that test. With of at-home testing kits results at home but requires a smartphone or to report Thus, with the If a results to the healthcare then that provider will be required to a public health can also report test results to the public health Some of of COVID-19 cases by at-home testing is very not has access to a smartphone or or a may not to report test result. Omai B. Garner: that has a wide enough to the need for at-home testing. If COVID-19 a viral respiratory then at-home testing be we that that there are that will the accuracy and impact of at-home testing for infectious disease that we can be for the next respiratory viral pandemic. Kimberle Chapin: is The convenience for self-collection and home testing a For there are assays and antigen assays with EUA There are multiple in-home collection options and several at-home tests. many will take the to FDA and what might be required for at-home be as COVID-19 in and the pandemic The of between tests and at-home tests may be even more to even more important to those who do not have healthcare, in and/or are to unprecedented of or need to the next pandemic. will need and and test by or free and available to up with the public health this for of Use of at-home testing in other disease or populations would be test have not seen the of home testing, and and healthcare providers can help their and George Turabelidze: in SARS-CoV-2 infections the question of whether at-home tests are of such antigen tests target nucleocapsid in the less than the it is that antigen test will not be by at in the The of to home testing up early during the COVID-19 in the United States of testing capacity at that As a we could not more accurately the of the pandemic in communities the while some were in the stage of others were not even More all types of home testing, this option may as a testing more A will on home testing for COVID-19 will to In the we will even more demand for testing capacity and of to public health where we need to in pandemic In the when we have healthcare and telemedicine a at-home testing may Nitika Pant Pai: The is for all testing and health associated with have the widespread of health in and and delays in that have to in in the and do in of the where the healthcare are and The virus has and has the in all healthcare systems that were from public COVID-19 has in many However, it has to many to Home testing is a in as a of this It will in the from over time and then In that self-tests can to to and a facility it is Susan Butler-Wu: The availability of at-home testing for infectious and COVID-19 in is a very to be for COVID-19 as well as other home tests for infectious is home testing will ability to detect and to surveillance (e.g., for With at-home tests for COVID-19 are in the United States only to those with to them. This is a that is from a of At-home testing in many a that the which was a response to testing. This response far on public health and testing in a of and systems the The inability to provide testing rapidly in all at cost to healthcare workers and patients from experience that testing needs to be close to the patient to have the best clinical and it not get any to the patient than in their own home. the availability of at-home testing not a system or a it provide a for the more rapid of both at-home and tests when the next pandemic comes they have to the of this and have the significant to the and of or and interpretation of or the for of the and to be for all of the that questions to the accuracy or of any of the are and all the and/or of Corporation. Pant of Health to from Pant an access for COVID-19 and home access HIV and care For and

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.038
Threshold uncertainty score0.127

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.007
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0020.001
Scholarly communication0.0040.003
Open science0.0010.002
Research integrity0.0030.004
Insufficient payload (model declined to judge)0.0380.025

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.057
GPT teacher head0.362
Teacher spread0.305 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations19
Published2021
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