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Record W4205207469 · doi:10.1137/1.9781611977073.58

Recognizing <i>k</i>-leaf powers in polynomial time, for constant <i>k</i>

2022· book-chapter· en· W4205207469 on OpenAlexaff
Manuel Lafond

Bibliographic record

VenueSociety for Industrial and Applied Mathematics eBooks · 2022
Typebook-chapter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Biological Computing
Canadian institutionsUniversité de Sherbrooke
Fundersnot available
KeywordsCombinatoricsGraphTime complexityMathematicsDegree (music)Tree (set theory)Function (biology)PolynomialConstant (computer programming)Discrete mathematicsComputer sciencePhysicsBiology

Abstract

fetched live from OpenAlex

A graph G is a k-leaf power if there exists a tree T whose leaf set is V (G), and such that uv ∊ E(G) if and only if the distance between u and v in T is at most k. The graph classes of k-leaf powers have several applications in computational biology, but recognizing them has remained a challenging algorithmic problem for the past two decades. The best known result is that 6-leaf powers can be recognized in polynomial time. In this paper, we present an algorithm that decides whether a graph G is a k-leaf power in time O(nf(k)) for some function f that depends only on k (but has the growth rate of a power tower function). Our techniques are based on the fact that either a k-leaf power has a corresponding tree of low maximum degree, in which case finding it is easy, or every corresponding tree has large maximum degree. In the latter case, large degree vertices in the tree imply that G has redundant substructures which can be pruned from the graph. In addition to solving a longstanding open problem, we hope that the structural results presented in this work can lead to further results on k-leaf powers.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.015
Threshold uncertainty score0.052

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0020.005
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0150.007

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.041
GPT teacher head0.238
Teacher spread0.197 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2022
Admission routes1
Has abstractyes

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