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Record W4205207469 · doi:10.1137/1.9781611977073.58

Recognizing <i>k</i>-leaf powers in polynomial time, for constant <i>k</i>

2022· book-chapter· en· W4205207469 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueSociety for Industrial and Applied Mathematics eBooks · 2022
Typebook-chapter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Biological Computing
Canadian institutionsUniversité de Sherbrooke
Fundersnot available
KeywordsCombinatoricsGraphTime complexityMathematicsDegree (music)Tree (set theory)Function (biology)PolynomialConstant (computer programming)Discrete mathematicsComputer sciencePhysicsBiology

Abstract

fetched live from OpenAlex

A graph G is a k-leaf power if there exists a tree T whose leaf set is V (G), and such that uv ∊ E(G) if and only if the distance between u and v in T is at most k. The graph classes of k-leaf powers have several applications in computational biology, but recognizing them has remained a challenging algorithmic problem for the past two decades. The best known result is that 6-leaf powers can be recognized in polynomial time. In this paper, we present an algorithm that decides whether a graph G is a k-leaf power in time O(nf(k)) for some function f that depends only on k (but has the growth rate of a power tower function). Our techniques are based on the fact that either a k-leaf power has a corresponding tree of low maximum degree, in which case finding it is easy, or every corresponding tree has large maximum degree. In the latter case, large degree vertices in the tree imply that G has redundant substructures which can be pruned from the graph. In addition to solving a longstanding open problem, we hope that the structural results presented in this work can lead to further results on k-leaf powers.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.781
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.041
GPT teacher head0.238
Teacher spread0.197 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it