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Health Analytics on Big COVID-19 Data

2021· article· en· W4206792129 on OpenAlexaff
Nguyen Tran, Carson K. Leung, Daryl L. X. Fung, Thanh Huy Daniel

Bibliographic record

Venue2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) · 2021
Typearticle
Languageen
FieldMedicine
TopicCOVID-19 diagnosis using AI
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsAutoencoderComputer scienceMachine learningArtificial intelligenceIdentification (biology)AnalyticsPredictive analyticsBig dataTest dataCoronavirus disease 2019 (COVID-19)Data miningData analysisPredictive modellingDeep learningData scienceDiseaseInfectious disease (medical specialty)Medicine

Abstract

fetched live from OpenAlex

Summary form only given, as follows. Health analytics, which make good uses of techniques like data mining and machine learning, can be applied to numerous real-life applications and services. For example, it can be applied to the identification and predictive analytics of coronavirus disease 2019 (COVID-19). However, many existing health analytic works require large volumes of data train the classification and prediction models. Note that these data (e.g., computed tomography (CT) scan images, viral/molecular test results) that can be expensive to produce and/or not easily accessible. For instance, partially due to privacy concerns and other factors, the volume of available disease data can be limited. Hence, in this paper, we present a system for health analytics. Specifically, the system make good use of autoencoder, few-shot learning and multitask learning to train the prediction model with only a few samples of more accessible and less expensive types of data (e.g., serology/antibody test results from blood samples), which helps to support prediction on classification of potential patients (e.g., potential COVID-19 patients). Moreover, the system also provides users (e.g., healthcare providers) with interpretable explanation of the prediction results, which increases their trust in the system. With this system, users could then focus and provide timely treatment to the true patients, thus preventing them for spreading the disease in the community. The system is helpful, especially for rural areas, when sophisticated equipment (e.g., CT scanners) may be unavailable. Evaluation results on a real-life datasets demonstrate the effectiveness of our system in health analytics, especially in classifying and explaining crucial information about COVID-19 patients.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.011
Threshold uncertainty score0.036

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.007
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0000.000
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0110.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.244
GPT teacher head0.430
Teacher spread0.186 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2021
Admission routes1
Has abstractyes

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