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<i>Corynebacterium</i>

2015· other· en· W4211116098 on OpenAlexaff
Kathryn Bernard, Guido Funke

Bibliographic record

VenueBergey's Manual of Systematics of Archaea and Bacteria · 2015
Typeother
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDiphtheria, Corynebacterium, and Tetanus
Canadian institutionsPublic Health Agency of Canada
Fundersnot available
KeywordsCorynebacteriumCorynebacterium diphtheriaeCorynebacterium glutamicumBiologyActinobacteriaBacteriaMicrobiologyrpoB16S ribosomal RNADiphtheriaGenetics

Abstract

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Abstract Co.ry.ne.bac.te'ri.um. Gr. n. coryne a club; L. neut. n. bacterium a rod, and in biology a bacterium (so called because the first ones observed were rod‐shaped); N.L. neut. n. Corynebacterium a club bacterium. Straight to slightly curved rods with tapered ends. Rods are usually short or of medium length. Club‐shaped forms may be observed ; sometimes ellipsoidal, ovoid or rarely, “whip handles” (see below, Corynebacterium matruchotii ) or thinner rods with bulges (see below, Corynebacterium sundsvallense ) observed. Snapping division produces angular and palisade arrangements of cells. Gram‐stain‐positive; some cells stain unevenly . Metachromatic (synonym being polyphosphate) granules may be observed for some species. Not‐acid‐fast (Ziehl–Neelsen stain), and no species has aerial mycelium. Nonsporeforming. All species are nonmotile . All species are catalase positive . All species are oxidase negative except for Corynebacterium bovis, Corynebacterium aurimucosum, Corynebacterium doosanense , and Corynebacterium maris (below). Many species are facultatively anaerobic and some are aerobic . Chemoorganotrophs. Some species are lipophilic. Many species produce acid from glucose and some other sugars in peptone media. Several species alkalinize citrate as sole carbon sources, but most do not. DNA G+C content (mol%) : 46–74. Type species : Corynebacterium diphtheriae (Kruse 1886) Lehmann and Neumann 1896, 350 (“ Bacillus diphtheria ” Kruse in Flügge 1886, 225). Taxonomic and Nomenclature Notes According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the genus Corynebacterium is: correct name (last update, February 2025) * . LPSN classification: Bacteria / Bacillati / Actinomycetota / Actinomycetes / Mycobacteriales / Corynebacteriaceae / Corynebacterium The genus Corynebacterium can also be recovered in the Genome Taxonomy Database (GTDB) as g__Corynebacterium (version v220) ** . GTDB classification: d__Bacteria / p__Actinomycetota / c__Actinomycetes / o__Mycobacteriales / f__Mycobacteriaceae / g__Corynebacterium * Meier‐Kolthoff et al. ( 2022 ). Nucleic Acids Res , 50 , D801 – D807 ; DOI: 10.1093/nar/gkab902 ** Parks et al. ( 2022 ). Nucleic Acids Res , 50 , D785 – D794 ; DOI: 10.1093/nar/gkab776 </jats

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.475
Threshold uncertainty score0.749

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.4750.508

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.242
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations23
Published2015
Admission routes1
Has abstractyes

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Same venueBergey's Manual of Systematics of Archaea and BacteriaSame topicDiphtheria, Corynebacterium, and TetanusFrench-language works237,207