MétaCan
Menu
Back to cohort
Record W4220859776 · doi:10.1126/science.abk0989

Global urban environmental change drives adaptation in white clover

2022· article· en· W4220859776 on OpenAlexafffund
James S. Santangelo, Rob W. Ness, Beata Cohan, Connor R. Fitzpatrick, Simon G. Innes, Sophie Koch, Lindsay S. Miles, Samreen Munim, Pedro R. Peres‐Neto, Cindy M. Prashad, Alex T. Tong, Windsor E. Aguirre, Philips Akinwole, Marina Alberti, Jackie Álvarez, Jill T. Anderson, Joseph Anderson, Yoshino Ando, Nigel R. Andrew, Fábio Angeoletto, Daniel N. Anstett, Julia Anstett, Felipe Aoki‐Gonçalves, A. Z. Andis Arietta, Mary T. K. Arroyo, Emily J. Austen, Fernanda Baena‐Díaz, Cory A. Barker, H.A. Baylis, Julia M. Beliz, Alfonso Benítez‐Mora, David Bickford, Gabriela Biedebach, Gwylim S. Blackburn, Mannfred M. A. Boehm, Stephen P. Bonser, Dries Bonte, Jesse R. Bragger, Cristina Branquinho, Kristien I. Brans, Jorge C. Bresciano, Peta Brom, Anna Bucharová, Briana Burt, James F. Cahill, Katelyn D. Campbell, Elizabeth J. Carlen, Diego Carmona, María Clara Castellanos, Giada Centenaro, Izan Chalen, Jaime A. Chaves, Mariana Chávez‐Pesqueira, Xiaoyong Chen, Angela M. Chilton, Kristina M. Chomiak, Diego F. Cisneros‐Heredia, Ibrahim Cisse, Aimée T. Classen, Mattheau S. Comerford, Camila Cordoba Fradinger, Hannah B. Corney, Andrew J. Crawford, Kerri M. Crawford, Maxime Dahirel, Santiago David, Robert De Haan, Nicholas J. Deacon, Clare Dean, Ek del‐Val, Eleftherios K. Deligiannis, Derek Denney, Margarete A Dettlaff, Michelle F. DiLeo, Yuanyuan Ding, Moisés E. Domínguez-López, Davide M. Dominoni, Savannah L. Draud, Karen Dyson, Jacintha Ellers, Carlos Iván Espinosa, Liliana Essi, Mohsen Falahati‐Anbaran, Jéssica C. de Faria Falcão, Hayden T. Fargo, Mark D. E. Fellowes, Raina Fitzpatrick, Leah Flaherty, Pádraic J. Flood, María Francisca Flores, Juan Fornoni, Amy G. Foster, Christopher J. Frost, Tracy L. Fuentes, Justin R. Fulkerson, Edeline Gagnon, Frauke Garbsch, Colin J. Garroway, Aleeza C. Gerstein, Mischa M. Giasson, E. Binney Girdler, Spyros Gkelis, William Godsoe, Anneke Golemiec, Mireille Golemiec, César González‐Lagos, Amanda J. Gorton, Kiyoko M. Gotanda, Gustaf Granath, Stephan Greiner, Joanna S. Griffiths, Filipa Grilo, Pedro E. Gundel, Benjamin Hamilton, Joyce M. Hardin, Tianhua He, Stephen B. Heard, André Henriques, Melissa Hernández-Poveda, Molly C. Hetherington-Rauth, Sarah J. Hill, Dieter F. Hochuli, Kathryn A. Hodgins, Glen R. Hood, Gareth R. Hopkins, Katherine A. Hovanes, Ava R. Howard, Sierra C. Hubbard, Carlos N. Ibarra‐Cerdeña, Carlos Iñiguez‐Armijos, Paola Jara‐Arancio, Benjamin J. M. Jarrett, Manon Jeannot, Vania Jiménez-Lobato, Mae Johnson, Oscar W. Johnson, Philip P. Johnson, Reagan A. Johnson, Matthew P. Josephson, Meen Chel Jung, Michael G. Just, Aapo Kahilainen, Otto S. Kailing, Eunice Kariñho‐Betancourt, Regina Karousou, Lauren A. Kirn, Anna Kirschbaum, Anna‐Liisa Laine, Jalene M. LaMontagne, Christian Lampei, Carlos Lara, Erica L. Larson, Adrián Lázaro‐Lobo, Jennifer H. Le, Deleon S. Leandro, Chris Lee, Yunting Lei, Carolina A. León, Manuel E. Lequerica Támara, Danica C. Levesque, Wan‐Jin Liao, Megan K. Ljubotina, Hannah Locke, Martin T. Lockett, Tiffany C Longo, Jeremy Lundholm, Thomas MacGillavry, Christopher R. Mackin, Alex R. Mahmoud, Isaac A. Manju, Janine Mariën, D. Nayeli Martínez, Marina Martínez-Bartolomé, Emily K. Meineke, Wendy Mendoza-Arroyo, Thomas Merritt, Lila Elizabeth L. Merritt, Giuditta Migiani, Emily S. Minor, Nora Mitchell, Mitra Mohammadi Bazargani, Angela T. Moles, Julia D. Monk, Christopher M. Moore, Paula Andrea Morales-Morales, Brook T. Moyers, Miriam Muñoz‐Rojas, Jason Munshi‐South, Shannon M. Murphy, Maureen Murúa, Melisa Neila, Ourania Nikolaidis, Iva Njunjić, Peter Nosko, Juan Núñez‐Farfán, Takayuki Ohgushi, Kenneth M. Olsen, Øystein H. Opedal, Cristina Ornelas, Amy L. Parachnowitsch, Aaron S. Paratore, Ángela M. Parody-Merino, Juraj Paule, Octávio S. Paulo, João Carlos Pena, Vera Pfeiffer, Pedro Pinho, Anthony Piot, Ilga Porth, Nicholas D. Poulos, Adriana Puentes, Jiao Qu, Estela Quintero‐Vallejo, Steve M. Raciti, Joost A. M. Raeymaekers, Krista Raveala, Diana J. Rennison, Milton Cézar Ribeiro, Jonathan Richardson, Gonzalo Rivas‐Torres, Benjamin J. Rivera, Adam B. Roddy, Erika Rodríguez-Muñoz, Raúl Román, Laura S. Rossi, Jennifer K. Rowntree, Travis J. Ryan, Santiago Salinas, Nathan J. Sanders, Luis Y. Santiago‐Rosario, Amy M. Savage, J. F. Scheepens, Menno Schilthuizen, Adam C. Schneider, Tiffany Scholier, Jared L. Scott, Summer A. Shaheed, Richard P. Shefferson, Caralee A. Shepard, Jacqui A. Shykoff, Georgianna Silveira, Alexis D. Smith, Lizet Solis-Gabriel, Antonella Soro, Katie V. Spellman, Kaitlin Stack Whitney, Indra Starke-Ottich, Jörg G. Stephan, Jessica D. Stephens, Justyna Szulc, Marta Szulkin, Ayco J. M. Tack, Ítalo Tamburrino, Tayler D. Tate, Emmanuel Tergemina, Panagiotis Theodorou, Ken Thompson, Caragh G. Threlfall, Robin M. Tinghitella, Lilibeth Toledo‐Chelala, Xin Tong, Léa Uroy, Shunsuke Utsumi, Martijn L. Vandegehuchte, Acer VanWallendael, Paula M. Vidal, Susana M. Wadgymar, Aiying Wang, Nian Wang, Montana L. Warbrick, Kenneth D. Whitney, Miriam Wiesmeier, J. Tristian Wiles, Jianqiang Wu, Zoe A. Xirocostas, Zhaogui Yan, Jiahe Yao, Jeremy B. Yoder, Owen Yoshida, Jingxiong Zhang, Zhigang Zhao, Carly D. Ziter, Matthew P. Zuellig, Rebecca A. Zufall, Juan E. Zurita, Sharon E. Zytynska, Marc T. J. Johnson

Bibliographic record

VenueScience · 2022
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant pathogens and resistance mechanisms
Canadian institutionsUniversity of CalgaryUniversity of New BrunswickUniversity of ManitobaLaurentian UniversityBrock UniversityConcordia UniversitySaint Mary's UniversityUniversity of OttawaNipissing UniversityUniversité LavalMount Allison UniversityUniversity of AlbertaGenome British ColumbiaUniversity of British ColumbiaUniversité de MonctonUniversity of TorontoMacEwan UniversityQueen's University
FundersNatural Environment Research CouncilNatural Sciences and Engineering Research Council of CanadaAgencia Nacional de Investigación y DesarrolloMax-Planck-GesellschaftUniversité de MonctonMacEwan UniversityCoordenação de Aperfeiçoamento de Pessoal de Nível SuperiorSight Research UKConselho Nacional de Desenvolvimento Científico e TecnológicoComisión Nacional de Investigación Científica y TecnológicaUniversity of Wisconsin-MadisonNational Science FoundationCompute CanadaFundação de Amparo à Pesquisa do Estado de São Paulo
KeywordsUrbanizationAdaptation (eye)GeographyBiologyEnvironmental changeEcologyAbiotic componentEconomic geographyClimate change

Abstract

fetched live from OpenAlex

Urbanization transforms environments in ways that alter biological evolution. We examined whether urban environmental change drives parallel evolution by sampling 110,019 white clover plants from 6169 populations in 160 cities globally. Plants were assayed for a Mendelian antiherbivore defense that also affects tolerance to abiotic stressors. Urban-rural gradients were associated with the evolution of clines in defense in 47% of cities throughout the world. Variation in the strength of clines was explained by environmental changes in drought stress and vegetation cover that varied among cities. Sequencing 2074 genomes from 26 cities revealed that the evolution of urban-rural clines was best explained by adaptive evolution, but the degree of parallel adaptation varied among cities. Our results demonstrate that urbanization leads to adaptation at a global scale.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.193
Teacher spread0.174 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations190
Published2022
Admission routes2
Has abstractyes

Explore more

Same venueScienceSame topicPlant pathogens and resistance mechanismsFrench-language works237,207