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Record W4223487063 · doi:10.1073/pnas.2113561119

Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States

2022· article· en· W4223487063 on OpenAlexafffund
Estee Y. Cramer, Evan L Ray, Velma K. Lopez, Johannes Bracher, Andrea Brennen, Alvaro J. Castro Rivadeneira, Aaron Gerding, Tilmann Gneiting, Katie House, Yuxin Huang, Abdul Hannan Kanji, Ayush Khandelwal, Khoa Le, Anja Mühlemann, Jarad Niemi, Apurv Shah, Ariane Stark, Yijin Wang, Nutcha Wattanachit, Martha Zorn, Youyang Gu, Sansiddh Jain, Nayana Bannur, Ayush Deva, Mihir Kulkarni, Srujana Merugu, Alpan Raval, Siddhant Shingi, Avtansh Tiwari, Jerome White, Neil F. Abernethy, Spencer Woody, Maytal Dahan, Spencer J. Fox, Kelly Gaither, Michael Lachmann, Lauren Ancel Meyers, James G. Scott, Mauricio Tec, Ajitesh Srivastava, Glover George, Jeffrey C. Cegan, Ian Dettwiller, William P. England, Matthew W. Farthing, Robert H. Hunter, Brandon J. Lafferty, Igor Linkov, Michael L. Mayo, Matthew Parno, Michael A. Rowland, Benjamin D. Trump, Yanli Zhang‐James, Samuel Chen, Stephen V. Faraone, Jonathan Hess, Christopher P. Morley, Asif Salekin, Dongliang Wang, Sabrina Corsetti, T. M. Baer, Marisa C. Eisenberg, Karl Falb, Yitao Huang, Emily T. Martin, Ella McCauley, Robert L. Myers, Tom Schwarz, Daniel Sheldon, Graham Gibson, Rose Yu, Liyao Gao, Yi-An Ma, Dongxia Wu, Xifeng Yan, Xiaoyong Jin, Yu-Xiang Wang, YangQuan Chen, Lihong Guo, Yanting Zhao, Quanquan Gu, Jinghui Chen, Lingxiao Wang, Pan Xu, Weitong Zhang, Difan Zou, Hannah Biegel, J. Lega, Steve McConnell, VP Nagraj, Stephanie Guertin, Christopher Hulme-Lowe, Stephen Turner, Yunfeng Shi, Xuegang Ban, Robert Walraven, Qi‐Jun Hong, Stanley Kong, Axel van de Walle, James Turtle, M. Ben-Nun, Steven Riley, Pete Riley, Ugur Koyluoglu, David DesRoches, Pedro Forli, Bruce H. Hamory, Christina Kyriakides, Helen Leis, John Milliken, Michael Moloney, James Morgan, Ninad Nirgudkar, Gokce Ozcan, Noah Piwonka, Matt Ravi, Chris Schrader, Elizabeth A. Shakhnovich, Daniel M. Siegel, Ryan Spatz, Chris Stiefeling, Barrie Wilkinson, Alexander Wong, Sean Cavany, Guido España, Sean M. Moore, Rachel J. Oidtman, T. Alex Perkins, David Kraus, Andrea Kraus, Zhifeng Gao, Jiang Bian, Wei Cao, Juan Lavista Ferres, Chaozhuo Li, Tie‐Yan Liu, Xing Xie, Shun Zhang, Shun Zheng, Alessandro Vespignani, Matteo Chinazzi, Jessica T. Davis, Kunpeng Mu, Ana Pastore y Piontti, Xinyue Xiong, Andrew Zheng, Jackie Baek, Vivek F. Farias, Andreea Georgescu, Retsef Levi, Deeksha Sinha, Joshua Wilde, Georgia Perakis, Mohammed Amine Bennouna, David Nze Ndong, Divya Singhvi, Ιoannis Spantidakis, Leann Thayaparan, Asterios Tsiourvas, Arnab Sarker, Ali Jadbabaie, Devavrat Shah, Nicolás Della Penna, Leo Anthony Celi, Saketh Sundar, Russ Wolfinger, Dave Osthus, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, D. Karlen, Matt Kinsey, Luke C. Mullany, Kaitlin Rainwater‐Lovett, Lauren Shin, Katharine Tallaksen, Shelby Wilson, Elizabeth C. Lee, Juan Dent, Kyra H. Grantz, Alison L. Hill, Joshua Kaminsky, Kathryn Kaminsky, Lindsay T. Keegan, Stephen A. Lauer, Joseph C. Lemaitre, Justin Lessler, Hannah R. Meredith, Javier Perez‐Saez, Sam Shah, Claire P. Smith, Shaun Truelove, Josh Wills, Maximilian Marshall, Lauren Gardner, Kristen Nixon, John C. Burant, Li Wang, Lei Gao, Zhiling Gu, Myungjin Kim, Xinyi Li, Guannan Wang, Yueying Wang, Shan Yu, Robert C. Reiner, Ryan M Barber, Emmanuela Gakidou, Simon I Hay, Steve Lim, Chris Murray, David M. Pigott, Heidi Gurung, Prasith Baccam, Steven A. Stage, Bradley T. Suchoski, B. Aditya Prakash, Bijaya Adhikari, Jiaming Cui, Alexander Rodríguez, Anika Tabassum, Jiajia Xie, Pınar Keskinocak, John Asplund, Arden Baxter, Buse Eylul Oruc, Nicoleta Serban, Sercan Ö. Arık, Mike Dusenberry, Arkady Epshteyn, Elli Kanal, Long Tan Le, Chunliang Li, Tomas Pfister, Dario Sava, Rajarishi Sinha, Thomas C. Tsai, Nathanael C. Yoder, Jinsung Yoon, Leyou Zhang, Sam Abbott, Nikos I Bosse, Sebastian Funk, Joel Hellewell, Sophie Meakin, Katharine Sherratt, Mingyuan Zhou, Rahi Kalantari, Teresa K. Yamana, Sen Pei, Jeffrey Shaman, Michael Lingzhi Li, Dimitris Bertsimas, Omar Skali Lami, Soni Saksham, Hamza Tazi Bouardi, Turgay Ayer, Madeline Adee, Jagpreet Chhatwal, Özden O. Dalgıç, Mary A. Ladd, Benjamin P. Linas, Peter P. Mueller, Jade Xiao, Yuanjia Wang, Qinxia Wang, Shanghong Xie, Donglin Zeng, Alden Green, Jacob Bien, Logan Brooks, Addison J. Hu, Maria Jahja, Daniel J. McDonald, Balasubramanian Narasimhan, Collin A. Politsch, Samyak Rajanala, Aaron Rumack, Noah Simon, Ryan J. Tibshirani, Rob Tibshirani, Valérie Ventura, Larry Wasserman, Eamon B. O’Dea, John M. Drake, Roberto Pagano, Ngoc Quoc Tran, Lam Si Tung Ho, Huong Huynh, Jo Walker, Rachel B. Slayton, Michael A. Johansson, Matthew Biggerstaff, Nicholas G Reich

Bibliographic record

VenueProceedings of the National Academy of Sciences · 2022
Typearticle
Languageen
FieldMathematics
TopicCOVID-19 epidemiological studies
Canadian institutionsDalhousie UniversityUniversity of British ColumbiaUniversity of VictoriaTRIUMF
FundersEngineer Research and Development CenterLos Alamos National LaboratoryCenters for Disease Control and PreventionNational Institute of General Medical SciencesMedical Research CouncilWinship Cancer InstituteBrown UniversitySloan School of Management, Massachusetts Institute of TechnologyUniversity of WashingtonUniversity of California, Los AngelesState University of New York Upstate Medical UniversityUniversity of California, Santa BarbaraDepartment of Internal Medicine, University of UtahDepartment of Psychiatry, Columbia UniversityJohns Hopkins Bloomberg School of Public HealthJohns Hopkins UniversityUniversity of California, San DiegoHarvard UniversityUniversity of North Carolina at Chapel HillMasarykova UniverzitaPeople's Government of Jilin ProvinceDirectorate for Biological SciencesDalhousie UniversityImperial College LondonNational Institute for Health and Care ResearchYork UniversityInstitute for Health Metrics and EvaluationUniversity of Science and Technology of ChinaRensselaer Polytechnic InstituteInstitute for Scientific InterchangeSanta Fe InstituteUniversity of Texas at AustinCarnegie Mellon UniversityIowa State UniversityUniversity of Notre DameUniversity of Southern CaliforniaTRIUMFArizona State UniversityMassachusetts Institute of TechnologySchool of Medicine, Boston UniversityJilin UniversitySyracuse UniversityEmory UniversityUniversity of BernGeorgia Institute of TechnologyClemson UniversityWellcome TrustMassachusetts General Hospital
KeywordsProbabilistic logicStaffingGeospatial analysisCoronavirus disease 2019 (COVID-19)Baseline (sea)Actuarial scienceOperations researchPublic healthComputer scienceEconometricsStatisticsBusinessGeographyMedicineEconomicsEngineeringPolitical scienceMathematicsArtificial intelligence

Abstract

fetched live from OpenAlex

Short-term probabilistic forecasts of the trajectory of the COVID-19 pandemic in the United States have served as a visible and important communication channel between the scientific modeling community and both the general public and decision-makers. Forecasting models provide specific, quantitative, and evaluable predictions that inform short-term decisions such as healthcare staffing needs, school closures, and allocation of medical supplies. Starting in April 2020, the US COVID-19 Forecast Hub (https://covid19forecasthub.org/) collected, disseminated, and synthesized tens of millions of specific predictions from more than 90 different academic, industry, and independent research groups. A multimodel ensemble forecast that combined predictions from dozens of groups every week provided the most consistently accurate probabilistic forecasts of incident deaths due to COVID-19 at the state and national level from April 2020 through October 2021. The performance of 27 individual models that submitted complete forecasts of COVID-19 deaths consistently throughout this year showed high variability in forecast skill across time, geospatial units, and forecast horizons. Two-thirds of the models evaluated showed better accuracy than a naïve baseline model. Forecast accuracy degraded as models made predictions further into the future, with probabilistic error at a 20-wk horizon three to five times larger than when predicting at a 1-wk horizon. This project underscores the role that collaboration and active coordination between governmental public-health agencies, academic modeling teams, and industry partners can play in developing modern modeling capabilities to support local, state, and federal response to outbreaks.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.008
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.074
Threshold uncertainty score0.146

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.008
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.509
GPT teacher head0.485
Teacher spread0.024 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations320
Published2022
Admission routes2
Has abstractyes

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