MétaCan
Menu
Back to cohort
Record W4224271469 · doi:10.1080/23802359.2022.2065220

The complete mitochondrial genome of the smudged eighty-eight butterfly <i>Diaethria gabaza eupepla</i> (Salvin &amp; Godman, 1868) (Insecta: Lepidoptera: Nymphalidae)

2022· article· en· W4224271469 on OpenAlexaff
Jan-Glynnis C. Alex, Mackenzie R. Alexiuk, Katrina J. Audet, Somtochukwu D. Azubuike, Amber S. Bezte, Madison B. Boychuk, Natalie L. Cale, Lara A. Carroll, Gabriela Y. Castro, Joshua Cheng, Janam Chopra, Gregory A. Corkal, Carla Louise M. Dizon, Moeez Farooq, Cecilia C. Flores, Ruzzell C. Flores, Tadbeer Grewal, Maria Haguisan, Kousha Kamal, Haziqa B. Kassim, Spencer J. Kauenhofen, Anushka Kothari, Suseong Lee, Yanju Li, Raju Majumdar, Ana Markovic, Hope K. Mcauley, Ashley M. McKay, Deesha Nayar, Gurasis Osahan, J. Paul, Dhruvrajsinh Raolji, Alexandria Reimer, Talia R. Shafai, Simarjit Singh, Shloke Srivastava, Jackie Wang, Tristan B. Wolfe, Shirly J. Xie, Jeffrey M. Marcus

Bibliographic record

VenueMitochondrial DNA Part B · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLepidoptera: Biology and Taxonomy
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsNymphalidaeBiologyMitochondrial DNAMonophylyPhylogenetic treeSister groupStop codonStart codonEvolutionary biologyLepidoptera genitaliaCladeGeneticsGeneBotany

Abstract

fetched live from OpenAlex

The smudged eighty-eight butterfly Diaethria gabaza eupepla (Salvin & Godman, 1868) (Nymphalidae) is a vividly colored aposematic butterfly from Central and South America. A complete circular mitochondrial genome (mitogenome) of 15,156 bp from D. gabaza eupepla was assembled from a genome skimming Illumina sequence library. The AT-rich (80.5% AT) mitogenome consists of 13 protein-coding genes, 22 tRNAs, 2 rRNAs, and a control region in the typical butterfly gene order. Diaethria gabaza eupepla COX1 begins with an atypical CGA start codon and ATP6, COX1, COX2, CYTB, ND1, ND4, ND4L, and ND5 mRNAs contain incomplete stop codons completed by the addition of 3’ A residues. Phylogenetic reconstruction places Diaethria as the sister clade to Hamadryas within monophyletic nymphalid subfamily Biblidinae, consistent with previous phylogenetic hypotheses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.221
Teacher spread0.203 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2022
Admission routes1
Has abstractyes

Explore more

Same venueMitochondrial DNA Part BSame topicLepidoptera: Biology and TaxonomyFrench-language works237,207