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Record W4224273251 · doi:10.31219/osf.io/h89js

NeuroLibre : A preprint server for full-fledged reproducible neuroscience

2022· preprint· en· W4224273251 on OpenAlexafffund
Agâh Karakuzu, Elizabeth DuPré, Loïc Tetrel, Patrick Bermudez, Mathieu Boudreau, Mary Chin, Jean‐Baptiste Poline, Samir Das, Pierre Bellec, Nikola Stikov

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCell Image Analysis Techniques
Canadian institutionsUniversité de MontréalOttawa Regional Cancer FoundationInstitut Universitaire de Gériatrie de MontréalMontreal Heart InstituteMontreal Neurological Institute and HospitalPolytechnique Montréal
FundersCourtois FoundationFondation Brain CanadaMcGill University
KeywordsPreprintWorld Wide WebComputer scienceNarrativeCode (set theory)Data scienceArt

Abstract

fetched live from OpenAlex

NeuroLibre is a preprint server for neuroscience Jupyter Books, blending code, visualization and narrative text into one document. NeuroLibre archives the environment, code and data and also implements a technical review to ensure readers can reproduce the work. NeuroLibre offers an online platform where readers can reproduce or modify each preprint from a web browser, without any installation required. We hope that NeuroLibre will contribute to usher the research community in a new area of open and reproducible neuroscience. The preprint server is built with open source components, and can be freely adapted to meet the needs of other communities in the future as well.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.024
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesScholarly communication, Open science, Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: Software
Teacher disagreement score0.993
Threshold uncertainty score0.992

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.024
Meta-epidemiology (narrow)0.0030.003
Meta-epidemiology (broad)0.0040.003
Bibliometrics0.0060.004
Science and technology studies0.0030.002
Scholarly communication0.0120.007
Open science0.0070.007
Research integrity0.0030.006
Insufficient payload (model declined to judge)0.3050.480

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.305
Teacher spread0.283 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations30
Published2022
Admission routes2
Has abstractyes

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