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Record W4225334559 · doi:10.21105/joss.04038

ADaPT-ML: A Data Programming Template for MachineLearning

2022· article· en· W4225334559 on OpenAlexafffund
Andrea M. Whittaker

Bibliographic record

VenueThe Journal of Open Source Software · 2022
Typearticle
Languageen
FieldComputer Science
TopicTopic Modeling
Canadian institutionsUniversity of Alberta
FundersMitacs
KeywordsComputer scienceTask (project management)Class (philosophy)Machine learningDomain (mathematical analysis)Point (geometry)Labeled dataArtificial intelligenceTraining setData typeSoftware deploymentSoftware engineeringProgramming language

Abstract

fetched live from OpenAlex

Classification is a task that involves making a prediction about which class(es) a data point belongs to; this data point can be text, an image, audio, or can even be multimodal.This task can become intractable for many reasons, including:• Insufficient training data to create a data-driven model; available training data may not be appropriate for the domain being studied, it may not be of the right type (e.g.only text but you want text and images), it may not have all of the categories you need, etc.• Lack of available annotators with domain expertise, and/or resources such as time and money to label large amounts of data.• Studying a phenomenon that changes rapidly, so what constitutes a class may change over time, making the available training data obsolete.ADaPT-ML (Figure 1) is a multimodal-ready MLOps system that covers the data processing, data labelling, model design, model training and optimization, and endpoint deployment, with the particular ability to adapt to classification tasks that have the aforementioned challenges.ADaPT-ML is designed to accomplish this by:• Using Snorkel (Ratner et al., 2020) as the data programming framework to create large, annotated, multimodal datasets that can easily adapt to changing classification needs for training data-driven models.• Integrating Label Studio (Tkachenko et al., 2020(Tkachenko et al., -2021) ) for annotating multimodal data.• Orchestrating the Labelling Function / Label Model / End Model development, testing, and monitoring using MLflow (Chen et al., 2020).• Deploying all End Models using FastAPI (Ramírez, 2021)

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.019
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Software · Consensus signal: none
Teacher disagreement score0.024
Threshold uncertainty score0.082

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.019
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.003
Bibliometrics0.0010.002
Science and technology studies0.0010.001
Scholarly communication0.0040.004
Open science0.0050.005
Research integrity0.0020.006
Insufficient payload (model declined to judge)0.0240.021

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.099
GPT teacher head0.335
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2022
Admission routes2
Has abstractyes

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