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Record W4225796813

Segmentation of Polyps in Gastrointestinal Tract Images

2021· preprint· en· W4225796813 on OpenAlexaff
Sabrina Nasrin, Javaneh Alavi, Pamila Viswanathan

Bibliographic record

VenueHAL (Le Centre pour la Communication Scientifique Directe) · 2021
Typepreprint
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsGastrointestinal tractSegmentationComputer scienceArtificial intelligenceMedicineInternal medicine
DOInot available

Abstract

fetched live from OpenAlex

Detecting abnormal tissues can be overlooked during body screening procedures including endoscopy, bronchoscopy, and colonoscopy. Colonoscopy is a routine screening procedure that can examine inside of the large intestine. However, observants might not be able to detect anomalies at initial phase. Therefore, a precise method is needed to detect the abnormalities. In this paper, we have implemented three different convolutional neural networks to segment polyps in gastrointestinal tract images. First, UNet which consist of two parts contraction and expansion for segmenting medical images. In this model data augmentation is performed with elastic deformations to yield accurate results with very few annotated images.Then, we implemented TriUnet which consists of three UNet models. The last model DivergentNets is an ensemble of five segmentation models named as TriUnet, Unetplusplus, FPN, DeeplabV3 and DeeplabV3plus. We have also tested images by using color correction, image pyramid and specularity removal. Our results suggest that when we combine different segmentation models as DivergentNets, it produces better results than UNet and TriUnet.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.005
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.268
Teacher spread0.257 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2021
Admission routes1
Has abstractyes

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