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Record W4229031701 · doi:10.1101/2022.05.03.490515

Fluorescence complementation enables quantitative imaging of cell penetrating peptide-mediated protein delivery in plants including WUSCHEL transcription factor

2022· preprint· en· W4229031701 on OpenAlexfundno aff
Jeffrey Wang, Natalie S. Goh, Henry Squire, Michael Y. Ni, Edward Lien, Eduardo González‐Grandío, Markita P. Landry

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2022
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsnot available
FundersDivision of Chemical, Bioengineering, Environmental, and Transport SystemsGordon and Betty Moore FoundationFoundation for Food and Agriculture ResearchU.S. Department of AgricultureAlfred P. Sloan FoundationUniversity of California BerkeleyCamille and Henry Dreyfus FoundationPhilomathia FoundationU.S. Department of EnergyOffice of ScienceNational Institutes of HealthNational Science Foundation
KeywordsBimolecular fluorescence complementationNicotiana benthamianamCherryCell-penetrating peptideGene deliveryProtein-fragment complementation assayCell biologyCytosolTranscription factorComplementationRecombinant DNAArabidopsisGreen fluorescent proteinPeptideBiologyBiochemistryChemistryBiophysicsTransfectionGeneEnzyme

Abstract

fetched live from OpenAlex

Abstract Protein delivery to plants offers many opportunities for plant bioengineering via gene editing and through direction of protein-protein interactions. However, the delivery and confirmation of successful protein delivery to plants presents both practical and analytical challenges. We present a GFP bimolecular fluorescence complementation-based tool, delivered complementation in planta (DCIP), which allows for unambiguous and quantitative measurement of protein delivery in leaves. Using DCIP, we demonstrate cell-penetrating peptide mediated cytosolic delivery of peptides and recombinant proteins in Nicotiana benthamiana . We show that DCIP enables measurement of delivery efficiency and enables functional screening of cell penetrating peptide efficacies for in-plant protein delivery. Finally, we demonstrate that DCIP detects cell penetrating peptide mediated delivery of recombinantly expressed proteins such as mCherry and Lifeact into intact leaves. Finally, we also demonstrate, for the first time, delivery of a recombinant plant transcription factor, WUSCHEL (AtWUS), in N. benthamiana . RT-qPCR analysis of AtWUS delivery in Arabidopsis seedlings also suggests delivered WUS can recapitulate AtWUS-overexpression transcriptional changes. All combined, DCIP offers a new and powerful tool for interrogating cytosolic delivery of proteins in plants and highlights future avenues for engineering plant physiology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.060
GPT teacher head0.271
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2022
Admission routes1
Has abstractyes

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Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicPlant Virus Research StudiesFrench-language works237,207