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Record W4229067331 · doi:10.1101/2022.05.04.490594

Population genomics of postglacial western eurasia

2022· preprint· en· W4229067331 on OpenAlexfundno aff
Morten E. Allentoft, Martin Sikora, Alba Refoyo-Martínez, Evan K. Irving-Pease, Anders Fischer, William Barrie, Andrés Ingason, Jesper Stenderup, Karl-Göran Sjögren, Alice Pearson, Bárbara Sousa da Mota, Bettina Schulz Paulsson, Alma Halgren, Ruairidh Macleod, Marie Louise Schjellerup Jørkov, Fabrice Demeter, Lasse Sørensen, Poul Otto Nielsen, Rasmus Amund Henriksen, Tharsika Vimala, Hugh McColl, Ashot Margaryan, Melissa Ilardo, Andrew H. Vaughn, Morten Fischer Mortensen, Anne Birgitte Nielsen, Mikkel Ulfeldt Hede, Niels Nørkjær Johannsen, Peter Rasmussen, Lasse Vinner, Gabriel Renaud, Aaron J. Stern, Theis Zetner Trolle Jensen, Gabriele Scorrano, Hannes Schroeder, Per Lysdahl, Abigail Ramsøe, Andrew J. Schork, Anders Rosengren, Anthony Ruter, Alan K. Outram, Aleksey A. Timoshenko, Alexandra Buzhilova, Alfredo Coppa, А. В. Зубова, Ana María Silva, Anders J. Hansen, Andrey Gromov, Andrey Logvin, Anne Birgitte Gotfredsen, Bjarne Henning Nielsen, Borja González-Rabanal, Carles Lalueza‐Fox, Catriona J. McKenzie, Charleen Gaunitz, Concepción Blasco, Corina Liesau von Lettow‐Vorbeck, Cristina Martínez‐Labarga, Dmitri V. Pozdnyakov, David Cuenca-Solana, David Lordkipanidze, Dmitri En’shin, Domingo C. Salazar‐García, T. D. Price, Dušan Borić, Elena Kostyleva, Elizaveta Veselovskaya, Emma Usmanova, Enrico Cappellini, Erik Brinch Petersen, Esben Kannegaard, Francesca Radina, Fulya Eylem Yediay, Henri Duday, Igor Gutiérrez-Zugasti, I. Merts, Inna Potekhina, Irinа Shevnina, Isin Altinkaya, Jean Guilaine, Jesper Hansen, J. Emili Aura Tortosa, Joào Zilhão, Jorge R. Vega, Kristoffer Buck Pedersen, Krzysztof Tunia, Lei Zhao, Liudmila N. Mylnikova, Lars Larsson, Laure Metz, Levon Yepiskoposyan, Lisbeth Pedersen, Lucia Sarti, Ludovic Orlando, Ludovic Slimak, Lutz Klassen, Malou Blank, Manuel R. González Morales, Mara Silvestrini, Maria Vretemark, M.S. Nesterova, Marina P. Rykun, Mario Federico Rolfo, Marzena Szmyt, Marcin M. Przybyła, Mauro Calattini, Mikhail Sablin, Miluše Dobisíková, Morten Meldgaard, Morten Johansen, Natalia Berezina, Nick Card, Nikolai A. Saveliev, О.Е. Пошехонова, Olga Rickards, Olga Lozovskaya, Olivér Gábor, Otto Uldum, Paola Aurino, П. А. Косинцев, Patrice Courtaud, Patricia Ríos Mendoza, Peder Mortensen, Per Lotz, Per Persson, Pernille Bangsgaard, Peter de Barros Damgaard, Peter Vang Petersen, María Pilar Prieto Martínez, Piotr Włodarczak, Roman Viktorovich Smolyaninov, Rikke Maring, Roberto Menduiña, Ruben Badalyan, Rune Iversen, Ruslan Turin, Sergey Vasilyev, Sidsel Wåhlin, Svetlana Borutskaya, S.N. Skochina, Søren A. Sørensen, Søren H. Andersen, Thomas Martini Jørgensen, Yuri B. Serikov, В. И. Молодин, Václav Smrčka, Victor Merz, Vivek Appadurai, Vyacheslav Moiseyev, Yvonne Magnusson, Kurt H. Kjær, Niels Lynnerup, Daniel J. Lawson, Peter H. Sudmant, Simon Rasmussen, Thorfinn Sand Korneliussen, Richard Durbin, Rasmus Nielsen, Olivier Delaneau, Thomas Werge, Fernando Racimo, Kristian Kristiansen, Eske Willerslev

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2022
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicForensic and Genetic Research
Canadian institutionsnot available
FundersNational Institute on AgingNational Institute of General Medical SciencesH. Lundbeck A/SNovo Nordisk FondenNOMIS StiftungNational Institutes of HealthMinistry of Education and Science of the Republic of KazakhstanMinisterio de Ciencia e InnovaciónAarhus Universitets ForskningsfondNovo NordiskUral Branch, Russian Academy of SciencesLundbeckfondenWellcome TrustDanmarks GrundforskningsfondH2020 Marie Skłodowska-Curie ActionsÀrainneachd Eachdraidheil AlbaSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungMedical Research CouncilUral Federal UniversityVillum FondenGeneralitat ValencianaAarhus UniversitetSocial Sciences and Humanities Research Council of CanadaNational Research FoundationRiksbankens JubileumsfondMinisterio de Economía y CompetitividadNational Science Foundation
KeywordsMesolithicCline (biology)GeographyHoloceneSubarctic climatePrehistoryPopulationBefore PresentSteppeHuman migrationHolocene climatic optimumAncient DNABeringiaArchaeologyEcologyBiologyPleistoceneDemography

Abstract

fetched live from OpenAlex

Summary Western Eurasia witnessed several large-scale human migrations during the Holocene 1–5 . To investigate the cross-continental impacts we shotgun-sequenced 317 primarily Mesolithic and Neolithic genomes from across Northern and Western Eurasia. These were imputed alongside published data to obtain diploid genotypes from >1,600 ancient humans. Our analyses revealed a ‘Great Divide’ genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers (HGs) were highly genetically differentiated east and west of this zone, and the impact of the neolithisation was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacements of HGs in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, while east of the Urals relatedness remained high until ∼4,000 BP, consistent with persistence of localised HG groups. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 BP resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive but we demonstrate that HGs from the Middle Don region contributed ancestry to them. Yamnaya-groups later admixed with individuals associated with the Globular Amphora Culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a ‘Neolithic steppe’ cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.251
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations97
Published2022
Admission routes1
Has abstractyes

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