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Record W4230571934 · doi:10.5858/arpa.2020-0801-le

In Reply

2021· letter· en· W4230571934 on OpenAlexaff
Julia Naso, Hui-Min Yang, David F. Schaeffer

Bibliographic record

VenueArchives of Pathology & Laboratory Medicine · 2021
Typeletter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer Genomics and Diagnostics
Canadian institutionsVancouver General HospitalUniversity of British Columbia
Fundersnot available
KeywordsLymphovascular invasionMedicineCancerInternal medicineMetastasis

Abstract

fetched live from OpenAlex

In Reply.—We thank the authors of this letter for bringing to our attention their well-considered paper, which became available in press after we had completed our study and drafted our manuscript. Although our studies differ in design (for instance, we assessed interpathologist variability using real-case synoptic data in addition to a survey-based approach, we assessed lymphovascular invasion reporting in addition to the reporting of pT3 versus pT4a stage, and our synoptic data elements were based on the College of American Pathologists Cancer Protocol Template1 rather than the Dutch Pathology Registry), our studies both demonstrate the existence of considerable variability in pT4a staging. We agree entirely that widely accepted, standardized diagnostic criteria for pT3 versus pT4a staging are needed and appreciate the value of the aforementioned study in highlighting this need.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.032
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.036
Threshold uncertainty score0.000

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.032
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0030.003
Scholarly communication0.0040.006
Open science0.0030.002
Research integrity0.0360.040
Insufficient payload (model declined to judge)0.0090.012

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.251
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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