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Record W4231311339 · doi:10.1021/cen-09544-scicon3

How TB sugars interact with mammalian receptors

2017· article· en· W4231311339 on OpenAlexaboutno aff
tu Borman

Bibliographic record

VenueC&EN Global Enterprise · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGlycosylation and Glycoproteins Research
Canadian institutionsnot available
Fundersnot available
KeywordsGlycanBacteriaReceptorBiochemistryMicrobiologyTuberculosisImmune systemBiologyHost (biology)GlycosylationEnzymeCell wallChemistryGlycoproteinComputational biologyImmunologyGeneticsMedicine

Abstract

fetched live from OpenAlex

Researchers have synthesized 60 glycans representative of all the classes of carbohydrates found on the tuberculosis bacterium and screened them against some human receptor proteins. By probing the way these glycans and proteins interact, the study provides insights into molecular mechanisms that enable TB bacteria to invade human cells and survive there during infections. Glycans found on surfaces of mycobacteria, the group to which the TB bacterium belongs, are known to cause host immune responses, but it has been difficult to profile the host proteins, called lectins, that recognize these sugars. Hypothetically, the glycans could be made enzymatically or isolated from bacteria. But most enzymes that make them are not known, and isolated glycans are hard to purify and characterize and lack linkers needed to immobilize them on arrays. Todd L. Lowary of the University of Alberta and coworkers therefore chemically synthesized the 60 representative glycans with linkers, attached them

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.758
Threshold uncertainty score0.572

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.282
Teacher spread0.273 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes1
Has abstractyes

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