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Record W4234090018 · doi:10.1002/0470862106.ia333

Circular Dichroism ( <scp>CD</scp> ) Spectroscopy

2005· other· en· W4234090018 on OpenAlexaff
P. Anthony Presta, Martin J. Stillman

Bibliographic record

VenueEncyclopedia of Inorganic Chemistry · 2005
Typeother
Languageen
FieldChemistry
TopicMolecular spectroscopy and chirality
Canadian institutionsWestern University
Fundersnot available
KeywordsCircular dichroismChromophoreSupramolecular chemistryChemistryChirality (physics)CrystallographyMoleculeEnantiomerSpectroscopyFolding (DSP implementation)Absorption spectroscopySupramolecular chiralityHelix (gastropod)Absorption (acoustics)MetalStereochemistryMaterials sciencePhotochemistryOrganic chemistryChiral symmetryOpticsPhysics

Abstract

fetched live from OpenAlex

Abstract Circular dichroism (CD) spectroscopy is of fundamental importance as a tool in all areas of chemistry and biochemistry because this technique is the simplest and fastest measure of the presence of the chiral species that lead to optical activity. Chiral centers and chiral species exist from the simplest molecules to complex organic molecules, from inorganic complexes to metal‐based biological molecules, typically metalloproteins; from folded polymers, which are typically peptides and proteins; to the supramolecular organization of the quaternary structure of proteins; including all forms of helical structure typified by the the double helix; to liquid crystals and beyond, to even more massive and organized species. For all these species, CD spectroscopy provides insight into the presence and the extent of the chiral electric field induced by the atomic and molecular organization. The optical activity is detected under electronic and vibrational absorption bands as a result of the differential absorption of left‐ and right‐circularly polarized light. Measurement of mirror images of the CD spectrum is commonly used to determine the enantiomeric purity of small molecules. The measurement of the change, and sometimes loss, of optical activity measured in the spectral region of the chiral chromophores can be used to determine and understand the denaturation of a folded protein as the chirality changes with the change in gross structural features associated with the folding. We focus particularly in this chapter on the influence of metals on the chiral properties of proteins. Metal binding results in changes in molecular and supramolecular conformations readily measured under metal‐based spectral bands. In cases for which the folding of the protein is almost entirely metal‐induced, the CD spectrum becomes an extremely sensitive marker for structural change as a function of metal loading allowing both the stoichiometry of metal binding and the coordination geometry to be proposed. Measurement of the chirality of a molecule is easy in the region 190–1000 nm as several relatively inexpensive instruments provide high sensitivity. Time‐resolved CD spectral data are also readily achievable using stopped‐flow devices. Measurement in the infrared regions is also popular and provides invaluable information; instruments can now be purchased “off the shelf”. The new growth area is the use of synchrotron radiation as the light source allowing CD spectral data to be measured in all regions of the electromagnetic spectrum, but particularly, for energies higher than 50 000 cm −1 (below 200 nm).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity, Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.248
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0620.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.217
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2005
Admission routes1
Has abstractyes

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