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Record W4234259435 · doi:10.1890/1540-9295-11.8.400

Dispatches

2013· review· en· W4234259435 on OpenAlexaboutno aff
ESA

Bibliographic record

VenueFrontiers in Ecology and the Environment · 2013
Typereview
Languageen
FieldEnvironmental Science
TopicAmphibian and Reptile Biology
Canadian institutionsnot available
Fundersnot available
KeywordsGeography

Abstract

fetched live from OpenAlex

Some salamander populations may have an invisible microbial shield protecting them from the deadly chytridiomycosis disease that is currently devastating amphibian populations worldwide, according to new research presented at the 2013 Ecological Society of America conference in Minneapolis, MN, in August. Researchers at the University of Maryland hypothesized that salamander declines along the US east coast may be due to Batrachochytrium dendrobatidis, the fungus that causes chytridiomycosis. However, field surveys revealed that only 1% of the salamanders tested harbored B dendrobatidis, even though they are susceptible to the fungal infection in lab experiments. The researchers therefore shifted their focus to determining whether something in nature was protecting the salamanders from infection. Carly Muletz, a PhD student at the University of Maryland, presented initial results comparing the skin microbiome composition – the cutaneous bacterial communities – of two species of terrestrial salamanders (Plethodon cinereus and Plethodon cylindraceus) in the Shenandoah, Catoctin, and Mt Rogers National Parks in the Appalachian Mountains of the eastern US. Skin swabs of salamanders reveal disease-fighting bacteria. To identify antifungal bacteria, Muletz pursued two approaches. First, she swabbed the salamanders' skin and cultured bacteria to determine which individuals could inhibit B dendrobatidis. Then she amplified the 16S rDNA sequences – the conserved genetic region of prokaryotic ribosomes – from the skin swabs to identify and characterize the entire skin bacterial community, a technique referred to as metagenomics. In total, Muletz identified 131 strains of bacteria capable of inhibiting B dendrobatidis. Interestingly, she found that salamanders in Shenandoah National Park contained the most antifungal bacteria (on average, four strains each). Furthermore, 96% of Shenandoah salamanders had at least one B dendrobatidis-inhibiting bacteria, whereas less than 50% of salamanders at Catoctin and Mt Rogers harbored any. “Something is happening at Shenandoah National Park, but I'm not yet sure what”, admits Muletz. It's not clear how the diversity of microbial communities relates to disease – does disease lower microbial diversity? Or does having lower diversity predispose a salamander to disease? These are questions increasingly being asked by wildlife biologists. “Pairing culturing work with metagenomics is a spectacular way to get at how microbes are involved in disease resistance”, says Valerie McKenzie, an amphibian ecologist at the University of Colorado Boulder, who is also exploring the importance of amphibian skin microbes in fending off disease. “It could be that the environment is shaping the microbiome, which shapes the organisms' response to disease”, she suggests. Wind power is often seen as an environmentally friendly energy source as it does not involve the burning of fossil fuels; however, construction of large-scale wind farms in environmentally sensitive areas may be ecologically harmful. India, the fifth largest wind power producer in the world, has seen a growing demand that wind power projects be subject to the same regulatory rigor as thermal and hydropower stations. At present, it is not mandatory to conduct an environmental impact assessment (EIA) for wind power projects under India's Environment Protection Act; approval from the Ministry of Environment and Forests is required only if the location of a wind power project is within a forested area or wildlife sanctuary. Now, an assessment conducted by the New Delhi-based advocacy group Centre for Science and Environment (CSE) has found that even these basic restrictions are routinely violated; about 45% of the total wind power generated in India derives from turbines located in forested areas. “Erection of turbines on hilltops and in forests means building access roads, which causes linear fragmentation of habitat and scares away animals, and the [subsequent] soil erosion results in silting of streams and water bodies”, explains Chandra Bhushan of CSE. Wind farms pose a threat to migratory birds if they are located in flight corridors and may also have human health impacts due to noise pollution and shadow flicker. Calls for more stringent regulation of wind power generation have intensified in light of these findings. “The environmental footprint of wind farms can be minimized by developing and implementing strict criteria for site selection and ensuring that ecologically sensitive lands are not used for wind farms”, says Ritwick Dutta (EIA Resource Centre, New Delhi, India). Some believe that subjecting wind energy to the same level of environmental regulation as other power sources could hamper the development of green energy. Alok Jindal of The Energy and Resources Institute (New Delhi, India) warns that regulation “may lead to delays in approval and implementation of wind power projects and limit the growth of wind power, as in some states most potential wind farm sites are in forested areas”. Natural gas is considered an efficient energy source because its combustion yields more energy per molecule of CO2 than do other fossil fuels, so that it has a smaller impact on the planet's greenhouse-gas burden. Yet the extraction and processing of natural gas “leaks” methane (the warming impact of which is 25 times greater than CO2) to the atmosphere, thereby reducing this climate advantage. However, a new report (Geophys Res Lett 40; doi:10.1002/grl.50811) suggests that methane emissions from natural gas industrial operations may be considerably greater than previously believed. Despite the recent surge in US natural gas production, accurate and reliable assessments of the associated methane emissions have been sorely lacking, according to study coauthor and atmospheric monitoring specialist Colm Sweeney (Boulder, CO). Over the past few years, US Environmental Protection Agency estimates have fluctuated substantially – between 0.16% and 1.42% of total annual methane production – casting doubts on the results and leading government officials to call for improved methods for determining emissions. Regarding climate effects, a 2012 study (P Natl Acad Sci USA 109: 6435–40) calculated that if methane leakage exceeded 3.2% of annual natural gas production, the immediate impact would surpass that of a coal-fired plant generating a comparable amount of electricity. To obtain information on methane leakage from oil and gas fields in Utah's Uintah Basin, Sweeney and 18 colleagues affiliated with the National Oceanic and Atmospheric Administration and the University of Colorado Boulder employed a “mass balance” technique that's used for gauging the atmospheric impacts of refineries and power plants. “The technology to do this from small planes, such as the one that we used [for this study], only became available a few years ago”, Sweeney explains. “We calculated actual emissions rates for the Basin using the measured difference between air upwind and downwind of the Basin, along with the wind speed and our knowledge of how high methane molecules emitted from the ground will travel as they move across the Basin”, he continues. Although only a single day proved ideal for airborne measurements during the February 2012 field-test period, the results were clear and surprising: the rate of methane leaking from natural gas operations averaged between 6.2% and 11.7% of overall production. “This negates any short-term (ie less than 70 years) climate benefit of natural gas from this Basin for electricity generation compared to coal and oil”, the researchers conclude, adding that the findings show that the method used can reliably determine methane leakage and highlight the need for further atmospheric monitoring to better assess these emissions. The exotic emerald ash borer (Agrilus planipennis; EAB) beetle is killing millions of trees and devastating ash (Fraxinus spp) populations in the midwestern US, but insect-eating birds such as woodpeckers are taking advantage of this new food source and their populations are responding, according to a new study (Biol Invasions 2013; doi:10.1007/s10530-013-0435-x). “The EAB invasion is a remarkable ecological event –something like a giant bomb blowing up with millions of dead trees and billions of beetles, all in an epicenter around Detroit, Michigan”, says Andrew Liebhold of the US Forest Service (Morgantown, WV), a coauthor of the study. “This [means] that there is a tremendous resource for anything that eats insects.” Liebhold and colleagues from Cornell University – with the help of a cadre of citizen scientists from Project FeederWatch (run by the Cornell Lab of Ornithology) – tested the responses of three different species of woodpecker and one species of nuthatch to the EAB outbreak, and found a surprising amount of variation in the responses of each type of bird. All four species eventually experienced population increases, although two of the species first showed declines. “Given that prior work had demonstrated that several species of woodpeckers can eat a high proportion (around 30–40%) of EAB larvae in an area, perhaps the biggest surprise was that we didn't see a more dramatic or obvious increase in several of those species”, explains coauthor Walt Koenig (Cornell University, Ithaca, NY). Liebhold and Koenig believe that although the increase in woodpecker populations is unlikely to stop the spread of EAB, it may slow it in some areas, and they note that many other species may benefit from the EAB invasion. “No doubt this invasion causes a huge pulse of dead trees, which triggers a succession of population responses by a lot of different organisms that are affected by dead and dying trees”, says Liebhold. Downy woodpecker (Picoides pubescens) populations initially declined in response to EAB, but after several years their numbers began to increase substantially. Liebhold also points out the important role that non-scientists played in collecting the data used in this research. “This study was possible because of citizen science. The epicenter of the EAB invasion is in an urban/suburban habitat, so the Project FeederWatch data were perfect for detecting the impact of the invasion.” Tired of buildings that are too cold in the summer and too warm in winter? Take offices that blast cold air when it's blistering outside: over-air conditioning means refrigerating the whole building to the lowest temperature anyone wants, and then re-heating the areas where people prefer it to be warmer. But relief may finally be in sight, and the fix would also save energy and cut carbon (C) emissions. “People are not comfortable and we're wasting a lot of energy”, points out David Lehrer, Communications Director at the University of California Berkeley's Center for the Built Environment (CBE). “We need to find a balance.” Now, CBE researchers think they have found a solution. Instead of setting the building temperature globally, they want to create a system that allows people to regulate their microclimates individually. This is easy to do. “When you're cold, you need to warm your extremities, and when you're hot, you need air moving around your face and head”, Lehrer explains. CBE's personal climate system includes fans, foot warmers, and chairs that, like seats in fancy cars, heat up or cool down on demand. “There's an immediate response”, Lehrer continues. “A lot of people want these chairs.” Switching from whole building to personalized climate control could lower energy use by a third, saving US$60 million and cutting 270 000 tons of C emissions per year in California alone. On the strength of on-campus pilot studies, the CBE team will optimize their system in the real world with a US$1.6 million grant from the California Energy Commission (Sacramento, CA). “We'll expand our field studies to working office buildings in a range of climates”, Lehrer continues. Participants will rate their comfort while sensors monitor building energy use. Too hot? Your workstation could shift your thermal profile toward cool greens and blues. Another energy-wasting contributor to discomfort is the high flow rate of forced-air systems. The industry standard is to exchange 30% of a building's air each hour, but a CBE study showed that dropping this to 10% increased people's comfort while cutting energy use by 5–20%, depending on the building. “We want to get the flow rate down”, Lehrer concludes. “Doing it in California could set the standard for other states.” Two Canadian environmental NGOs, Équiterre and the David Suzuki Foundation, are suing the Canadian Government for refusing to review the approval of three herbicide/pesticide compounds already banned in the European Union (EU) and for stalling on replying to requests for reviews of 26 other such chemicals. Represented by Ecojustice, an organization that provides free legal services to charities and citizens defending environmental causes, the claimants allege that by not reviewing these compounds, the Canadian Minister of Health and the Pest Management Regulatory Agency (PMRA) have not fulfilled their obligation to protect citizens' health and the environment. The three compounds at the heart of the dispute are chlorthal-dimethyl, trifluralin, and trichlorfon. Chlorthal-dimethyl, which in Canada is still used to control weed growth, was banned in the EU in 2009; the compound is a possible human carcinogen known to contaminate groundwater. Trifluralin appears in a range of herbicides used extensively in Canada, but was banned in the EU in 2007, following concerns about its persistence in soil, bioaccumulation, and toxicity to fish. Trichlorfon, which has a pesticidal action, is used in Canada to protect pine plantations and cattle; it fell from grace in the EU in 2007, over concerns about neurological effects in humans. “Recent scientific evidence has led to these substances being banned in other countries, and as such the Federal Government has an obligation to re-evaluate [them]”, says Mara Kerry, Science and Policy Director at the David Suzuki Foundation (Vancouver, Canada). “Our interpretation of the law is that it is not discretionary. The Government has a responsibility to protect the health of Canadians and the environment.” A spokesperson for Health Canada and the PMRA said: “Officials and legal counsel are currently reviewing the contents of the applications and will respond to the applications within the time frame set by the court.” The other 26 compounds for which the applicants have requested a special review of approval include atrazine, a potential endocrine disrupter often detected in drinking water. Although widely used in the US and Canada, atrazine is also banned in the EU. “It's [been] nearly a year since the request for review was submitted”, points out Elaine MacDonald, a Senior Scientist with Ecojustice (Toronto, Canada). “And still no answer.” Health Canada and the PMRA limited their reply to “Health Canada's primary objective in regulating pesticides is to protect Canadians' health and their environment.” A court date has not yet been set for hearings to begin. Businesses that plunder the environment may have a harder time obtaining cheap loans. More than 40 of the world's leading banks are launching a project to incorporate the value of natural capital into their investment risk assessments. The project springs from last year's Rio+20, the UN Conference on Sustainable Development, during which the participating banks signed the Natural Capital Declaration (NCD), a document stating that natural resource exploitation destroys ecosystem services, thereby threatening financial health. The NCD defines natural capital as the Earth's stocks of soil, air, water, and living things, and the ecosystem services they provide. “Despite being fundamental to our well-being, their daily use remains almost undetected within our economic system”, the NCD asserts. Ignorance of the environmental damage caused by businesses poses an increasing threat to bank portfolios, says Lauren Smart, executive director of Trucost (London, UK), a natural capital consulting firm. For instance, if a company pollutes the water it depends on to make its products, profits will decline and the company may be unable to pay back loans from the bank. A Trucost report estimates that annual global environmental damages will increase from US$6.6 trillion to US$28.6 trillion by 2050. The NCD signatories plan to shine a light on these neglected risks and have recently set up working groups to develop tools that investors can use to integrate natural capital into loans, investments, and insurance policies, according to Liesel Van Ast, NCD project manager (Oxford, UK). The working groups will also develop methods for companies to account for and report on natural capital in quarterly or annual financial statements. The signatories aim to complete this work by 2020. Ultimately, the NCD tools will reveal to what degree a company's environmental impact creates a risk for investment or insurance. “This could mean that banks might engage with their clients to help them adopt best practices that don't erode natural capital”, Smart suggests. Alternatively, financial institutions might boost the cost of loans or insurance to firms that degrade the environment. “If banks start paying attention to the impacts of our economy on the environment, that's a very positive development”, says Peter Victor, an economist at York University (Toronto, Canada). But such an approach doesn't guarantee that environmental impacts will be reduced below thresholds deemed protective of ecosystem quality, such as lowering atmospheric CO2 concentrations to below 350 ppm, he cautions. One of the biggest challenges for those trying to manage or protect rivers has always been identifying pollution problems as they occur –people will sometimes observe illegal dumping, for example, but may not have a way to report it quickly and accurately. Now, a team working in the Shenandoah River and Potomac River watersheds in the eastern US has developed an app to address the problem, enabling anyone with a smartphone to report an incident immediately and – if they prefer –anonymously. Known as the Water Reporter, the free app auto-tags a user's location and asks for some basic information about the incident; users can also include a photo, if desired. A report is then sent to a local clean-water advocate known as a waterkeeper –which can be either a group or simply an individual – and a live map is generated online. Potomac Riverkeeper Board the app to report pollution in if has to a of fields on a they too to it explains of the and one of the “We to make it as easy as possible to report WV), of the Potomac Riverkeeper says group has already 18 from the app since it was in One even in an at a industrial site in “We have he says about for the anyone can do this as as they have a and to and a advocate with the Riverkeeper in New that the new app could be and may be something group could think it could help small to manage the work flow and of the data that from these of she “The to engage on the of water and this it easy for them to do experienced an summer this an area of million nearly of the daily in of leading the Administration – the – to a heat response on In reduced drinking water to over million people and production on million in the of the “The of between In a is as when or explains an in the of Environmental Health at the Center for and construction on the this were in many with and the the total of is not yet from some of the of this in for in three times as many as the as of at least people had from in and between in when of were the heat response work during times of the this was not are one type of event to global to the on we can more in the in of and as a of says The heat has ecological some in of with economic In a developed a plan to create wind corridors that would cool air into the from the but eventually the project was because of This after of in of officials work on the of organisms are the and some scientists that this will of species and ecosystem However, a new study Sci 2013; that forests on the of ecosystem services and of communities previously of and occur in response to of and species about of global says of the study and director of the US of Institute of Although resource to these as and used forests on as a study to at how they the human population for in areas, from in the to But of the forests are with species the and other researchers report that and the of species per are all in the forests than in the forests they “We found that rates were below those from he In all being would currently be forests if not for the The was so that only were to it Now, species are within the explains. “Our results that a that all lands and all species is to with global The approach to would be to to species and these to a explains a plant at the University of this is often doesn't always and perhaps away from other that could more “Given that are the new this study how we might and says a terrestrial ecologist at the University of Colorado

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.924
Threshold uncertainty score0.000

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0020.001
Scholarly communication0.0050.003
Open science0.0020.004
Research integrity0.0030.002
Insufficient payload (model declined to judge)0.9240.843

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.211
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2013
Admission routes1
Has abstractyes

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Same venueFrontiers in Ecology and the EnvironmentSame topicAmphibian and Reptile BiologyFrench-language works237,207