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<i>Methylohalobius</i>

2016· other· en· W4235037607 on OpenAlexaff
Peter F. Dunfield

Bibliographic record

VenueBergey's Manual of Systematics of Archaea and Bacteria · 2016
Typeother
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicrobial metabolism and enzyme function
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsGammaproteobacteriaBiologyHalophileGenusGenomeWhole genome sequencingBacteriaType speciesBotany16S ribosomal RNAGeneticsGene

Abstract

fetched live from OpenAlex

Abstract Me.thy.lo.ha.lo'bi.us. N.L. neut. n. methylum , the methyl group; Gr. masc. n. hals , halos salt; Gr. masc. n. bios life; N.L. masc. n. Methylohalobius salt requiring, methyl‐using life. The genus Methylohalobius comprises moderately halophilic, obligately methanotrophic bacteria. They have the highest salt tolerance of any methanotroph yet cultured, growing optimally at 1–1.5 M NaCl and tolerating NaCl concentrations up to 2.5 M (14.6% w/v). A complete genome sequence of the type strain is available. Cells are Gram‐negative, aerobic, nonpigmented, motile, coccoid, or spindle‐shaped and occur singly, in pairs, or in short chains. An extensive intracytoplasmic membrane system common to gammaproteobacterial methanotrophs is present. Growth occurs on methane and methanol. Carbon is assimilated via the ribulose monophosphate pathway. The genus Methylohalobius belongs to the class Gammaproteobacteria , family Methylothermaceae , and includes a single species, Methylohalobius crimeensis . The DNA G + C content is 58.3% based on complete genome sequencing. Known habitats are hypersaline lakes. DNA G + C content (mol%) : 58.3 (genome analysis). Type species : Methylohalobius crimeensis Heyer, Berger, Hardt, and Dunfield 2005, 1824 VP . Taxonomic and Nomenclature Notes According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the genus Methylohalobius is: correct name (last update, February 2025) * . LPSN classification: Bacteria / Pseudomonadati / Pseudomonadota / Gammaproteobacteria / Methylococcales / Methylothermaceae / Methylohalobius The genus Methylohalobius can also be recovered in the Genome Taxonomy Database (GTDB) as g__Methylohalobius (version v220) ** . GTDB classification: d__Bacteria / p__Pseudomonadota / c__Gammaproteobacteria / o__Methylococcales / f__Methylothermaceae / g__Methylohalobius * Meier‐Kolthoff et al. ( 2022 ). Nucleic Acids Res , 50 , D801 – D807 ; DOI: 10.1093/nar/gkab902 ** Parks et al. ( 2022 ). Nucleic Acids Res , 50 , D785 – D794 ; DOI: 10.1093/nar/gkab776

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.615
Threshold uncertainty score0.751

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.235
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2016
Admission routes1
Has abstractyes

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