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Record W4238094263 · doi:10.3410/f.733721250.793574140

Faculty Opinions recommendation of FBP17 and CIP4 recruit SHIP2 and lamellipodin to prime the plasma membrane for fast endophilin-mediated endocytosis.

2020· dataset· en· W4238094263 on OpenAlexaff
Sergio Grinstein

Bibliographic record

VenueFaculty Opinions – Post-Publication Peer Review of the Biomedical Literature · 2020
Typedataset
Languageen
FieldMedicine
TopicPancreatic function and diabetes
Canadian institutionsHospital for Sick Children
FundersBiotechnology and Biological Sciences Research CouncilKarolinska InstitutetSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungLister Institute of Preventive MedicineMedical Research CouncilDirectorate for Biological SciencesRoyal SocietyNational Institutes of HealthNational Science FoundationYale UniversityKing's College London
KeywordsEndocytosisPrime (order theory)Cell biologyChemistryBiologyBiochemistryCellCombinatoricsMathematics

Abstract

fetched live from OpenAlex

Endocytosis mediates the cellular uptake of micronutrients and turnover of plasma membrane proteins.Clathrin-mediated endocytosis (CME) is the major uptake pathway in resting cells1, but several Clathrin-independent endocytic (CIE) routes exist in parallel2,3.One such pathway, fast Endophilin-mediated endocytosis (FEME), is not constitutive but triggered upon activation of certain receptors including β1 adrenergic receptor (β1-AR)4.FEME activates promptly following stimulation as Endophilin is pre-enriched by the Pi(3,4)P 2 -binding protein Lamellipodin (Lpd)4,5.However, in the absence of stimulation, Endophilin foci abort and disassemble after a few seconds.Looking for additional proteins involved in FEME, we found that 20 out of 65 BAR domaincontaining proteins tested colocalized with Endophilin spots.Among them, FBP17 and CIP4 prime the membrane of resting cells for FEME by recruiting the 5'-lipid phosphatase SHIP2 and Lpd to mediate local production of Pi(3,4)P 2 and Endophilin pre-enrichment.Membrane-bound GTP-loaded Cdc42 recruits FBP17 and CIP4, before being locally deactivated by RICH1 and

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Commentary · Consensus signal: none
Teacher disagreement score0.212
Threshold uncertainty score0.711

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.002
Science and technology studies0.0010.000
Scholarly communication0.0020.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.2120.103

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.344
Teacher spread0.298 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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