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Record W4238333709 · doi:10.32920/ryerson.14652867

High frequency photoacoustic characterization of single cells

2021· preprint· en· W4238333709 on OpenAlexafffund
Eric M. Strohm

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldEngineering
TopicPhotoacoustic and Ultrasonic Imaging
Canadian institutionsMcMaster UniversityToronto Metropolitan University
FundersTerry Fox FoundationOntario Institute for Cancer ResearchOntario Ministry of Research and InnovationNatural Sciences and Engineering Research Council of CanadaCanada Research ChairsU.S. Department of Defense
KeywordsFinite element methodPhotoacoustic effectMaterials scienceTransducerPhotoacoustic imaging in biomedicinePhotoacoustic spectroscopyOpticsEchinocyteAnalytical Chemistry (journal)Molecular physicsAcousticsChemistryPhysicsRed blood cellChromatography

Abstract

fetched live from OpenAlex

This dissertation presents the first photoacoustic study of single cells using ultra-high frequencies (UHF, over 100 MHz). At these frequencies, unique features occur in the photoacoustic signal spectrum which depend on the cell size, morphology and structure. A finite element model (FEM) was developed to simulate the photoacoustic signals from ideal spherical droplets containing a perfluorocarbon liquid and optically absorbing nanoparticles. The model was applied to droplets in suspension and on a boundary to examine how the photoacoustic spectrum varies with droplet size and configuration, and compared to measurements using a 375 MHz transducer. Good agreement in the spectral features between the measured values and the FEM and analytical solution were observed. For the droplet on a boundary, additional spectral features were observed there were correctly predicted by the FEM, but not the analytical solution. The FEM could be applied to situations where the analytical model cannot be used, such as the asymmetric shape of red blood cells (RBCs). Measurements of single RBCs were then compared to the FEM. The frequency location of the spectral minima shifted to higher frequencies as the RBC rotated from a vertical to horizontal orientation. The spectral minima shifted to lower frequencies as the RBC swelled from the normal biconcave shape to a spherical morphology. Healthy RBCs were differentiated from spherocytes, echinocytes and swollen RBCs using changes in the photoacoustic spectrum (p<0.001). These results suggest that the photoacoustic spectrum can be used to classify RBCs according to their shape and pathology. Classification of cells using the photoacoustic spectral features was applied to measurements of blood cells and circulating tumor cells (CTCs) such as melanoma and acute myeloid leukemia (AML) cells. Measurements of 89 cells showed that variations in the spectrum and signal amplitude could be used to identify and differentiate melanoma and AML cells from RBCs, thus identifying foreign cells in the bloodstream. This dissertation investigates how UHF photoacoustics can be used to identify and classify cells and particles in a sample using their photoacoustic spectra, with the end goal of using these methods to identify cell pathology and detect CTCs clinically.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.183
Teacher spread0.175 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes2
Has abstractyes

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