MétaCan
Menu
Back to cohort
Record W4240411210 · doi:10.1101/549360

Thermodynamic Measures of Human Brain Development from Fetal Stage to Adulthood

2019· preprint· en· W4240411210 on OpenAlexaff
Edward A. Rietman, Sophie Taylor, Hava T. Siegelmann, Marco Cavaglià, Jack A. Tuszyński

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2019
Typepreprint
Languageen
FieldPhysics and Astronomy
TopicAdvanced Thermodynamics and Statistical Mechanics
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsGibbs free energyHuman brainBrain developmentBrain functionFetusMaturity (psychological)BiologyPsychologyThermodynamicsDevelopmental psychologyPhysicsNeurosciencePregnancy

Abstract

fetched live from OpenAlex

Abstract This paper analyzes the data obtained from tissue samples of the human brains containing protein expression values. The data have been processed for their thermodynamic measure in terms of the Gibbs free energy of the corresponding protein-protein interaction networks. We have investigated the functional dependence of the Gibbs free energies on age and found consistent trends for most of the 16 main brain areas. The peak of the Gibbs energy values is found at birth with a trend toward plateauing at the age of maturity. We have also compared the data for males and females and uncovered functional differences for some of the brain regions. Author Summary In this paper we briefly outline the theoretical basis for a novel analysis of brain development in terms of a thermodynamic measure (Gibbs free energy) for the corresponding protein-protein interaction networks. We analyzed the overall developmental patterns for Gibbs free energy as a function of age across all brain regions. Of particular note was the significant upward trend in the fetal stages, which is generally followed by a sharp dip at birth and a plateau at maturity. We then compared the trends for female and male samples. A crossover pattern was observed for most of the brain regions, where the Gibbs free energy of the male samples were lower than the female samples at prenatal and neonatal ages, but higher at ages 8-40 finally converging at late adulthood.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.239
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicAdvanced Thermodynamics and Statistical MechanicsFrench-language works237,207