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GENETIC DIVERSITY AND POPULATION STRUCTURE

2015· article· en· W4241838395 on OpenAlexaboutno aff
S.N. Chirkov, Yu.N. Prikhod’ko

Bibliographic record

VenueSel skokhozyaistvennaya Biologiya · 2015
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsnot available
Fundersnot available
KeywordsDiversity (politics)Evolutionary biologyGenetic diversityPopulation structurePopulationBiologyGeographySociologyDemographyAnthropology

Abstract

fetched live from OpenAlex

Plum pox virus (PPV) is the causal agent of Sharka that is considered the most detrimental viral disease of stone fruit crops.Regular monitoring of stone fruit plantings using enzyme-linked immunosorbent assay and reverse-transcription polymerase chain reaction for PPV detection and identification resulted in the findings of numerous focuses of the disease in European Russia.The virus was found in collections, variety test plots, nurseries, fructiferous and abandoned orchards, decorative plantings, private gardens, wild stone fruit trees growing in urban and rural areas.PPV was detected in naturally infected plum (Prunus domestica), peach (P.persica), nectarine (P.persica var.nectarina), myrobalan (P.cerasifera), blackthorn (P.spinosa), downy cherry (P.tomentosa), sour cherry (P.cerasus), sweet cherry (P.avium), apricot (P.armeniaca) and Canadian plum (P.nigra).PPV has been reported from Petersburg, Novgorod, Tver, Moscow, Tula, Voronezh, Tambov, Lipetsk, Belgorod, Rostov, Samara, Saratov, Volgograd, Astrakhan, Stavropol, Krasnodar, Karachay-Cherkessia, Dagestan, and Crimea regions.Six of the nine known PPV strains (D, M, Rec, W, C, CR) have been revealed in European Russia.Most isolates belong to the strains D (38 %), W (25 %), CR (23 %), M (7 %) and C (7 %).Two distinct PPV-Rec isolates have been found on myrobalan and plum in Crimea and Stavropol regions.Population of PPV in European Russia and, probably, all over the European part of the former USSR seems to be the most diverse in the world due to wide spread of PPV isolates belonging to the strains W, C, and CR that were never detected or only sporadically identified in other countries until now.Phylogenetic analysis of their genomes shows that these three strains constitute the supercluster divergent from other PPV strains.This evolutionary branch originated from a common ancestor and apparently developed mainly in Russia.The wide dissemination of PPV in Russia is a potential threat for newly bred stone fruit cultivars and further selection and biotechnological works.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.078
Threshold uncertainty score0.480

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.067
GPT teacher head0.250
Teacher spread0.184 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2015
Admission routes1
Has abstractyes

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