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Spirochaetes

2014· other· en· W4253460678 on OpenAlexaff
Simon Houston, John S. Taylor, Caroline E. Cameron

Bibliographic record

VenueEncyclopedia of Life Sciences · 2014
Typeother
Languageen
FieldMedicine
TopicMycobacterium research and diagnosis
Canadian institutionsUniversity of Victoria
Fundersnot available
KeywordsSpirochaetePeriplasmic spaceBiologyMicrobiologyBorrelia burgdorferiTreponemaLeptospiraLeptospira interrogansFlagellumBacteriaGeneticsVirologyGeneEscherichia coliSerotypeSyphilis

Abstract

fetched live from OpenAlex

Abstract Species in the phylum Spirochaetes (order: Spirochaetales) are thin, spiral‐shaped or wave‐like, highly motile bacteria that are best visualised by darkfield microscopy. Spirochaetes are Gram‐negative‐like, in that they possess inner and outer membranes separated by a peptidoglycan‐containing periplasmic space. Beyond these ultrastructural similarities, few parallels exist with conventional Gram‐negative bacteria. There have been more than 90 spirochaete species identified, including the well‐known pathogenic, disease‐causing species Treponema pallidum (syphilis), Leptospira sp. (leptospirosis) and Borrelia burgdorferi (Lyme disease). The phylogenetic relationship among spirochaetes is evident at the level of gross phenotypic characteristics, which include a distinctive morphology derived from the presence of periplasmic flagella. In this article, the authors describe the genomic, physiologic, structural and functional features that make Spirochaetes unique among the prokaryotes. Key Concepts: Spirochaetes are a genetically and morphologically distinct group of bacteria. Spirochaetes are thin spiral‐shaped or wave‐like bacteria that are highly motile. Endoflagella/periplasmic flagella provide spirochaetes with their characteristic corkscrew‐like motility. Spirochaetes differ from typical Gram‐negative bacteria at the ultrastructural level. Spirochaetes are chemo‐organotrophic, grow in diverse conditions and are comprised of both pathogenic and nonpathogenic members. Complete genome sequencing has allowed for the characterisation and differentiation of spirochaetes at the genetic level. Medically important spirochaetes belong to the three genera Borrelia , Leptospira and Treponema .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.055
Threshold uncertainty score0.988

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0130.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.302
Teacher spread0.282 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2014
Admission routes1
Has abstractyes

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