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Record W4254234448 · doi:10.21203/rs.3.rs-23368/v1

Prediction of clinical and biomarker conformed Alzheimer’s disease and mild cognitive impairment from multi-feature brain structural MRI

2020· preprint· en· W4254234448 on OpenAlexfundno aff
Binyin Li, Miao Zhang, Joost M. Riphagen, Kathryn Morrison Yochim, Biao Li, Jun Liu, David H. Salat

Bibliographic record

VenueResearch Square (Research Square) · 2020
Typepreprint
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsnot available
FundersNIH Blueprint for Neuroscience ResearchNational Institute on AgingNational Institute of Biomedical Imaging and BioengineeringCanadian Institutes of Health ResearchNational Institutes of HealthGenentechIXICOH. Lundbeck A/SEisaiNorthern California Institute for Research and EducationPfizerBiogenBioClinicaMcDonnell Center for Systems NeuroscienceF. Hoffmann-La RocheUniversity of Southern CaliforniaFoundation for the National Institutes of HealthScience and Technology Commission of Shanghai MunicipalityNovartis Pharmaceuticals CorporationU.S. Department of DefenseEli Lilly and CompanyBristol-Myers SquibbAlzheimer's Disease Neuroimaging InitiativeMeso Scale DiagnosticsAlzheimer's AssociationServierUniversity of Minnesota
KeywordsBiomarkerCognitive impairmentDiseaseFeature (linguistics)MedicineCognitionNeuroimagingPsychologyNeuroscienceInternal medicineBiologyPhilosophy

Abstract

fetched live from OpenAlex

Abstract Background: Structural neuroimaging has been applied towards identification of individuals with Alzheimer’s disease (AD) and mild cognitive impairment (MCI). However, these methods are greatly impacted by age limiting their utility for detection of preclinical pathology. Therefore, careful consideration of age effects in the modeling of AD degenerative patterns could provide more sensitive detection of the earliest stages of brain disease. Methods: We built linear models for age based on multiple combined structural features (cortical thickness, subcortical structural volumes, ratio of gray to white matter signal intensity, white matter signal abnormalities, total intracranial volume) in 272 healthy adults across a wide age range (D1: age 36-108). These models were then used to create a new support vector machine (SVM) training model with 10-fold cross validation in 136 AD and 268 control participants (D2) based on deviations from the expected age-effects found in the initial sample. Subsequent validation assessed the accuracy of the SVM model to correctly classify AD patients in a new dataset (D3). Finally, we applied the classifier to individuals with MCI to evaluate prediction for early impairment and longitudinal cognitive change. Results: Optimal cross-validation accuracy was 93.07% in the D2, compared to 91.83% without age detrending in D1. In the validation dataset (D3), the classifier obtained an accuracy of 84.85% (56/66), sensitivity of 85.36% (35/41) and specificity of 84% (21/25). In the MCI dataset, we observed significantly greater longitudinal cognitive decline in MCI who were classified as more ‘AD-like’ (MCI-AD), and this effect was pronounced in individuals who were late MCI. The top five contributive features were volumes of left hippocampus, right hippocampus, left amygdala, the thickness of left and right medial temporal & parahippocampus gyrus. Conclusions: Linear detrending for age in SVM for combined structural features resulted in good performance for classification of AD and generalization of MCI prediction. Such procedures should be employed in future work.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.008
metaresearch head score (Gemma)0.088
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Meta-epidemiology (narrow), Science and technology studies, Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.357
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0080.088
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0010.006
Scholarly communication0.0000.000
Open science0.0010.007
Research integrity0.0010.006
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.369
GPT teacher head0.486
Teacher spread0.117 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2020
Admission routes1
Has abstractyes

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