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Record W4254249012 · doi:10.3410/f.735563036.793568843

Faculty Opinions recommendation of CEP120 interacts with C2CD3 and Talpid3 and is required for centriole appendage assembly and ciliogenesis.

2019· dataset· en· W4254249012 on OpenAlexaff
Michael F. Olson

Bibliographic record

VenueFaculty Opinions – Post-Publication Peer Review of the Biomedical Literature · 2019
Typedataset
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and Kidney Cyst Diseases
Canadian institutionsToronto Metropolitan University
FundersMinistry of Science and Technology, TaiwanArizona Biomedical Research CommissionAcademia Sinica
KeywordsCiliogenesisCentrioleAppendageCiliumCentrosomeCell biologyBiologyGeneticsAnatomyMicrotubuleGene

Abstract

fetched live from OpenAlex

Centrosomal protein 120 (CEP120) was originally identified as a daughter centriole-enriched protein that participates in centriole elongation.Recent studies showed that CEP120 gene mutations cause complex ciliopathy phenotypes in humans, including Joubert syndrome and Jeune asphyxiating thoracic dystrophy, suggesting that CEP120 plays an additional role in ciliogenesis.To investigate the potential roles of CEP120 in centriole elongation and cilia formation, we knocked out the CEP120 gene in p53-deficient RPE1 cells using the CRISPR/Cas9 editing system, and performed various analyses.We herein report that loss of CEP120 produces short centrioles with no apparent distal and subdistal appendages.CEP120 knockout was also associated with defective centriole elongation, impaired recruitment of C2CD3 and Talpid3 to the distal ends of centrioles, and consequent defects in centriole appendage assembly and cilia formation.Interestingly, wild-type CEP120 interacts with C2CD3 and Talpid3, whereas a disease-associated CEP120 mutant (I975S) has a low affinity for C2CD3 binding and perturbs cilia assembly.Together, our findings reveal a novel role of CEP120 in ciliogenesis by showing that it interacts with C2CD3 and Talpid3 to assemble centriole appendages and by illuminating the molecular mechanism through which the CEP120 (I975S) mutation causes complex ciliopathies.Centrioles are microtubule (MT)-based organelles that exist as part of the centrosome and are also essential for the formation of cell structures known as cilia and flagella.Centriole duplication starts at the G1-S transition of the cell cycle.A nascent centriole (daughter centriole) starts to grow from the proximal end of a pre-existing centriole (mother centriole) in G1 phase of cell cycle, elongates through the S and G2 phases, and reaches its full length at early mitosis.In this cell cycle, the daughter centriole has not yet acquired subdistal appendages (SDAs) and distal appendages (DAs), cannot be basal body for primary cilia, but can produce new daughter centriole near the proximal end 1-5 .After its second round of mitosis, this centriole becomes a fully mature mother centriole [1][2][3][4][5] .The primary cilium is a hair-like MT-based structure that protrudes from the cell surface and is responsible for sensing extracellular signals and regulating cell homeostasis and development.We previously showed that myosin-Va mediates the transportation of preciliary vesicles (PCVs) to the DA of a mother centriole as the earliest event that defines the onset of ciliogenesis 6 .These PCVs fuse with other incoming PCVs to form a large ciliary vesicle through the membrane shaping proteins EHD1 and EHD3 7 .This initial step that converts the mother centriole into a basal body, is followed by removal of the centriolar coiled coil protein 110 (CP110) that caps the distal end of the mother centriole, the assembly of ciliary transition zone, and the growth of axoneme microtubules during ciliogenesis 8 .A current model holds that centriole duplication occurs after activation of PLK4, followed by assembling a SAS-6-containing cartwheel at the proximal end of mother centriole 9-14 .CEP135 serves as a bridge molecule that connects SAS-6 and CPAP, linking the cartwheel to the centriolar MTs 15 .CPAP then acts together with CEP120 and SPICE to promote the assembly and elongation of centriolar MTs during S/G2 phase 16,17 .However, we do not yet fully understand the molecular basis through which a full-length centriole assembles its own SDAs and DAs to become a mature centriole and how a mature centriole is converted to a basal body to initiate ciliogenesis.C2CD3 and Talpid3 are evolutionarily conserved genes essential for vertebrate development and ciliogenesis [18][19][20][21][22] .Recent studies showed that C2CD3 is required for the recruitment of centriolar DA proteins 21 and loss of C2CD3 results institute of Biomedical Sciences, Academia Sinica, taipei, taiwan.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: none
Teacher disagreement score0.377
Threshold uncertainty score0.889

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0020.000
Scholarly communication0.0030.001
Open science0.0010.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.3770.145

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.332
Teacher spread0.309 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2019
Admission routes1
Has abstractyes

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