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Record W4280517196 · doi:10.3389/frans.2022.867938

Review of Variable Selection Methods for Discriminant-Type Problems in Chemometrics

2022· article· en· W4280517196 on OpenAlexaff
Michael Armstrong, A. Paulina de la Mata, James J. Harynuk

Bibliographic record

VenueFrontiers in Analytical Science · 2022
Typearticle
Languageen
FieldChemistry
TopicSpectroscopy and Chemometric Analyses
Canadian institutionsThe Metabolomics Innovation CentreUniversity of Alberta
Fundersnot available
KeywordsPartial least squares regressionFeature selectionChemometricsLinear discriminant analysisMathematicsPattern recognition (psychology)DiscriminantRank (graph theory)Artificial intelligenceStatisticsBlock (permutation group theory)Dimensionality reductionVariable (mathematics)Selection (genetic algorithm)Random variateCurse of dimensionalityComputer scienceMachine learningRandom variableCombinatorics

Abstract

fetched live from OpenAlex

Discriminant-type analyses arise from the need to classify samples based on their measured characteristics (variables), usually with respect to some observable property. In the case of samples that are difficult to obtain, or using advanced instrumentation, it is very common to encounter situations with many more measured characteristics than samples. The method of Partial Least Squares Regression (PLS-R), and its variant for discriminant-type analyses (PLS-DA) are among the most ubiquitous of these tools. PLS utilises a rank-deficient method to solve the inverse least-squares problem in a way that maximises the co-variance between the known properties of the samples (commonly referred to as the Y -Block), and their measured characteristics (the X -block). A relatively small subset of highly co-variate variables are weighted more strongly than those that are poorly co-variate, in such a way that an ill-posed matrix inverse problem is circumvented. Feature selection is another common way of reducing the dimensionality of the data to a relatively small, robust subset of variables for use in subsequent modelling. The utility of these features can be inferred and tested any number of ways, this are the subject of this review.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.006
Threshold uncertainty score0.022

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.007
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.002
Bibliometrics0.0040.010
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0020.001
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0060.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.035
GPT teacher head0.379
Teacher spread0.345 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2022
Admission routes1
Has abstractyes

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