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Phylogenetics Support the Description of a New Sichuanese Species, Susanne’s Gentian, <i>Gentiana susanneae</i> (Gentianaceae)

2022· article· en· W4283511018 on OpenAlexaff
Adrien Favre, James S. Pringle, Peng‐Cheng Fu

Bibliographic record

VenueSystematic Botany · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant and Fungal Species Descriptions
Canadian institutionsEspace pour la vie
Fundersnot available
KeywordsGentianaBiologyGentianaceaeBotanyPhylogeneticsChloroplast DNACalyxBiological dispersalCladeTaxonomy (biology)BiodiversityEndemismEvolutionary biologyEcology

Abstract

fetched live from OpenAlex

Abstract— The region of the Qinghai-Tibet Plateau hosts a remarkable biodiversity, including a plethora of endemics. There, the process of documenting biodiversity is still ongoing, and recently, an unusual plant of Gentiana section Frigida was discovered at Cuopu Lakes (Sichuan, China). Although Flora of China identified these specimens as G. algida based upon unmistakable traits (e.g. corolla colour and length, sessile flowers), it was obvious that the Sichuanese plants strongly differed morphologically from G. algida specimens from Siberia and North America. In order to clarify their relationships, we used an integrative approach, investigating not only morphological traits, but also phylogenetic relationships (based upon plastome and rDNA-cistron), as well as chloroplast structure. Whereas the rDNA-cistron phylogeny was poorly resolved, the plastome phylogeny was well supported in both Bayesian inference and maximum likelihood analyses. Our findings indicate that the samples of G. algida from Cuopu Lakes are morphologically and genetically distinct from those collected elsewhere, supporting the recognition of a new species, G. susanneae . The new species differs from G. purdomii (another similar species) by having sessile flowers, and from G. algida by being a generally much taller plant with more and longer flowers, and by having a smaller calyx. Gentiana susanneae clusters with other species from the region of the Qinghai-Tibet Plateau from which it differs morphologically, and is only distantly related to the G. algida / G. frigida clade, which stems from a dispersal event out of Tibet. Based upon these solid lines of evidence, G. susanneae is described and illustrated (drawings and photographs). In addition, a conservation assessment and an identification key modified from Flora of China are provided.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.766
Threshold uncertainty score0.871

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.214
Teacher spread0.189 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2022
Admission routes1
Has abstractyes

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