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Record W4283750033 · doi:10.1038/s41586-022-04824-9

Grey wolf genomic history reveals a dual ancestry of dogs

2022· article· en· W4283750033 on OpenAlexaff
Anders Bergström, David W. G. Stanton, Ulrike H. Taron, Laurent Frantz, Mikkel‐Holger S. Sinding, Erik Ersmark, Saskia Pfrengle, Molly Cassatt‐Johnstone, Ophélie Lebrasseur, Linus Girdland-Flink, Daniel Fernandes, Morgane Ollivier, Leo Speidel, Shyam Gopalakrishnan, Michael V. Westbury, Jazmín Ramos‐Madrigal, Tatiana R. Feuerborn, Ella Reiter, Joscha Gretzinger, Susanne C. Münzel, Pooja Swali, Nicholas J. Conard, Christian Carøe, James Haile, Anna Linderholm, Semyon Androsov, Ian Barnes, Chris Baumann, Norbert Benecke, Hervé Bocherens, Selina Brace, Ruth F. Carden, Dorothée G. Drucker, Sergey Fedorov, Mihály Gasparik, Mietje Germonpré, Semyon Grigoriev, Pam Groves, Stefan Hertwig, Varvara V. Ivanova, Luc Janssens, Richard P. Jennings, Aleksei Kasparov, Irina V. Kirillova, Yaroslav V. Kuzmin, П. А. Косинцев, Martina Lázničková‐Galetová, Charlotte Leduc, Pavel A. Nikolskiy, Marc Nussbaumer, Cóilín O’Drisceoil, Ludovic Orlando, Alan K. Outram, Elena Y. Pavlova, Angela Perri, Małgorzata Pilot, Vladimir V. Pitulko, В. В. Плотников, А. В. Протопопов, André Rehazek, Mikhail Sablin, Andaine Seguin-Orlando, Jan Storå, Christian Verjux, Victor F. Zaibert, Grant D. Zazula, Philippe Crombé, Anders J. Hansen, Eske Willerslev, Jennifer A. Leonard, Anders Götherström, Ron Pinhasi, Verena J. Schuenemann, Michael Hofreiter, M. Thomas P. Gilbert, Beth Shapiro, Greger Larson, Johannes Krause, Love Dalén, Pontus Skoglund

Bibliographic record

VenueNature · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicHuman-Animal Interaction Studies
Canadian institutionsCanadian Museum of NatureYukon University
FundersNatural Environment Research CouncilMedical Research CouncilNarodowa Agencja Wymiany AkademickiejRussian Science FoundationUniversität ZürichKnut och Alice Wallenbergs StiftelseUral Branch, Russian Academy of SciencesLundbeckfondenUppsala Multidisciplinary Center for Advanced Computational ScienceRoyal Irish AcademySvenska Forskningsrådet FormasGrantová Agentura České RepublikyAage og Johanne Louis-Hansens FondCancer Research UKBelgian Federal Science Policy OfficeSight Research UKWellcome TrustFrancis Crick InstituteScience for Life LaboratoryVetenskapsrådetVelux FondenEuropean CommissionVallee Foundation
KeywordsEvolutionary biologyGenealogyGray wolfBiologyDual (grammatical number)GeneticsGeographyHistoryArtCanisEcologyLiterature

Abstract

fetched live from OpenAlex

Abstract The grey wolf ( Canis lupus ) was the first species to give rise to a domestic population, and they remained widespread throughout the last Ice Age when many other large mammal species went extinct. Little is known, however, about the history and possible extinction of past wolf populations or when and where the wolf progenitors of the present-day dog lineage ( Canis familiaris ) lived 1–8 . Here we analysed 72 ancient wolf genomes spanning the last 100,000 years from Europe, Siberia and North America. We found that wolf populations were highly connected throughout the Late Pleistocene, with levels of differentiation an order of magnitude lower than they are today. This population connectivity allowed us to detect natural selection across the time series, including rapid fixation of mutations in the gene IFT88 40,000–30,000 years ago. We show that dogs are overall more closely related to ancient wolves from eastern Eurasia than to those from western Eurasia, suggesting a domestication process in the east. However, we also found that dogs in the Near East and Africa derive up to half of their ancestry from a distinct population related to modern southwest Eurasian wolves, reflecting either an independent domestication process or admixture from local wolves. None of the analysed ancient wolf genomes is a direct match for either of these dog ancestries, meaning that the exact progenitor populations remain to be located.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.320
Teacher spread0.300 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations189
Published2022
Admission routes1
Has abstractyes

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