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Record W4283766053 · doi:10.1101/2022.06.29.22275982

Hippocampal grading provides higher Alzheimer’s Disease prediction accuracy than hippocampal volume

2022· preprint· en· W4283766053 on OpenAlexafffund
Cassandra Morrison, Mahsa Dadar, Neda Shafiee, D. Louis Collins

Bibliographic record

VenuemedRxiv · 2022
Typepreprint
Languageen
FieldMedicine
TopicDementia and Cognitive Impairment Research
Canadian institutionsDouglas Mental Health University InstituteMcGill UniversityMontreal Neurological Institute and Hospital
FundersNational Institute of Biomedical Imaging and BioengineeringCanadian Institutes of Health ResearchNational Institutes of HealthGenentechIXICOH. Lundbeck A/SServierEisaiNorthern California Institute for Research and EducationFondation Brain CanadaPfizerBiogenBioClinicaF. Hoffmann-La RocheUniversity of Southern CaliforniaEli Lilly and CompanyU.S. Department of DefenseMeso Scale DiagnosticsAlzheimer's Disease Neuroimaging InitiativeNovartis Pharmaceuticals CorporationAlzheimer SocietyBristol-Myers SquibbNational Institute on AgingAlzheimer Society Research ProgramAlzheimer's AssociationFoundation for the National Institutes of Health
KeywordsHippocampal formationNeuroimagingAlzheimer's diseaseNeuroscienceComputer scienceRandom forestGrading (engineering)MedicineArtificial intelligenceDiseasePathologyPsychologyBiology

Abstract

fetched live from OpenAlex

Abstract Background Finding an early biomarker of Alzheimer’s disease (AD) is essential to develop and implement early treatments. Much research has focused on using hippocampal volume to measure neurodegeneration in aging and Alzheimer’s disease (AD). However, a new method to measure hippocampal change, known as hippocampal grading, has shown enhanced predictive power in older adults. It is unknown whether this method can capture hippocampal changes at each progressive stage of AD better than hippocampal volume. The goal of this study was to determine if hippocampal grading is more strongly associated with group differences between normal controls (NC), early MCI (eMCI), late (lMCI), and AD than hippocampal volume. Methods Data from 1666 Alzheimer’s Disease Neuroimaging Initiative older adults with baseline MRI scans were included in the first set of analyses (513 normal controls NC, 269 eMCI, 556 lMCI, and 328 AD). Sub-analyses were also completed using only those that were amyloid positive (N=834; 179 NC, 148 eMCI, 298 lMCI, and 209 AD). We compared seven different classification techniques to classify participants into their correct cohort using 10-fold cross-validation. The following classifiers were applied: support vector machines, decision trees, k-nearest neighbors, error-correcting output codes, binary Gaussian kernel, binary linear, and random forest. These multiple classifiers enable comparison to other research and examination of the most suitable classifier for Scoring by Nonlocal Image Patch Estimator (SNIPE) grading, SNIPE volume, and Freesurfer volume. This model was then validated in the Australian Imaging, Biomarker & Lifestyle Flagship Study of Ageing (AIBL). Results SNIPE grading provided the highest classification accuracy over SNIPE volume and Freesurfer volume for all classifications in both the full sample and amyloid positive sample. When classifying NC from AD, SNIPE grading provided an accuracy of 89% for the full sample and 87% for the amyloid positive group. Much lower accuracies of 65% and 46% were obtained when using Freesurfer in the full sample and amyloid positive sample, respectively. Similar accuracies were obtained in the AIBL validation cohort for SNIPE grading (NC vs AD: 90% classification accuracy). Conclusion These findings suggest that SNIPE grading offers increased prediction accuracy compared to both SNIPE volume and Freesurfer volume. SNIPE grading offers promise as a means to classify between people with and without AD. Future research is needed to determine the predictive power of grading at detecting conversion to MCI and AD in amyloid positive cognitively normal older adults (i.e., early in the AD continuum). Key points HC grading may better classify different disease cohorts than HC volume Higher prediction accuracy was obtained for HC grading than HC volume HC grading offers promise as a method to detect declines in aging and Alzheimer’s

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.011
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.011
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.050
GPT teacher head0.333
Teacher spread0.283 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2022
Admission routes2
Has abstractyes

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