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Record W4284709701 · doi:10.21203/rs.3.rs-1807889/v1

An unusual tandem kinase fusion protein confers leaf rust resistance in wheat

2022· preprint· en· W4284709701 on OpenAlex
Yajun Wang, Michaël Abrouk, Spyridon Gourdoupis, Dal‐Hoe Koo, Miroslava Karafiátová, István Molnár, Jaroslav Doležel, Naveenkumar Athiyannan, Emile Cavalet-Giorsa, Łukasz Jaremko, Jesse Poland, Simon G. Krattinger

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueResearch Square · 2022
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicWheat and Barley Genetics and Pathology
Canadian institutionsKootenay Association for Science & Technology
FundersNational Research, Development and Innovation OfficeEuropean Regional Development FundHorizon 2020 Framework ProgrammeKing Abdullah University of Science and TechnologyNational Science Foundation
KeywordsChromosomal translocationBiologyGeneGeneticsPlant disease resistanceIntrogression

Abstract

fetched live from OpenAlex

<title>Abstract</title> The introgression of chromosome segments from wild relatives is an established strategy to enrich crop germplasm with novel disease resistance genes. Here, we use mutagenesis and transcriptome sequencing to clone the leaf rust resistance gene <italic>Lr9,</italic> which was introduced into bread wheat from the wild grass species <italic>Aegilops umbellulata</italic>. We establish that <italic>Lr9</italic> encodes an unusual tandem kinase fusion protein. Long-read sequencing of a wheat <italic>Lr9</italic> introgression line and the putative <italic>Ae. umbellulata</italic> <italic>Lr9</italic> donor enabled us to assemble the ~28.4-Mb <italic>Lr9</italic> translocation and to identify the translocation breakpoint. We likewise cloned <italic>Lr58</italic>, which was reportedly introgressed from <italic>Ae. triuncialis</italic>, but has an identical coding sequence compared to <italic>Lr9</italic>. Cytogenetic and haplotype analyses corroborate that the two genes originate from the same translocation event. Our work sheds light on the emerging role of kinase fusion proteins in wheat disease resistance, expanding the repertoire of disease resistance genes for breeding.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.894
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.002
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.071
GPT teacher head0.350
Teacher spread0.279 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it