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Record W4285095273 · doi:10.1038/s41467-022-31423-z

Author Correction: MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants

2022· erratum· en· W4285095273 on OpenAlexaff
Morten Simonsen Dueholm, Marta Nierychlo, Kasper Skytte Andersen, Vibeke Børsholt Rudkjøbing, Simon Knutsson, Sonia Arriaga, Rune Bakke, Nico Boon, Faizal Bux, Magnus Christensson, Adeline Seak May Chua, Thomas P. Curtis, Eddie Cytryn, Leonardo Erijman, Claudia Etchebehere, Despo Fatta‐Kassinos, Dominic Frigon, Maria Carolina Garcia‐Chaves, April Z. Gu, Harald Horn, David Jenkins, Norbert Kreuzinger, Sheena Kumari, Ana Lanham, Yingyu Law, TorOve Leiknes, Eberhard Morgenroth, Adam Muszyński, Steve Petrovski, Maite Pijuan, Suraj Babu Pillai, Maria A.M. Reis, Rong Qi, Simona Rossetti, Robert J. Seviour, Nick Tooker, Pirjo Vainio, Mark C.M. van Loosdrecht, R. R. Vikraman, J. Wanner, David G. Weissbrodt, Xianghua Wen, Zhang Tong, Per Halkjær Nielsen, Mads Albertsen

Bibliographic record

VenueNature Communications · 2022
Typeerratum
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsMcGill University
FundersVillum Fonden
Keywords16S ribosomal RNAArchaeaAmpliconTaxonomy (biology)Clinical microbiologyLibrary scienceParagraphComputer scienceComputational biologyBiologyBacteriaEcologyWorld Wide WebGeneticsGeneMicrobiologyPolymerase chain reaction

Abstract

fetched live from OpenAlex

Authors and Affiliations Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark Morten Kam Dahl Dueholm, Marta Nierychlo, Kasper Skytte Andersen, Vibeke Rudkjøbing, Simon Knutsson, Per H. Nielsen, Mads Albertsen & Per Halkjær Nielsen Environmental Science Department, The Institute for Scientific and Technological Research of San Luis Potosi (IPICYT), San Luis Potosí, Mexico Sonia Arriaga Department of Process, Energy and Environmental Technology, University College of Southeast Norway, Porsgrunn, Norway Rune Bakke Center for Microbial Ecology and Technology, Ghent University, Ghent, Belgium Nico Boon Institute for Water and Wastewater Technology, Durban University of Technology, Durban, South Africa Faizal Bux & Sheena Kumari Veolia Water Technologies AB, AnoxKaldnes, Lund, Sweden Magnus Christensson Department Of Chemical Engineering, Faculty of Engineering, University of Malaya, Kuala Lumpur, Malaysia Adeline Seak May Chua Environmental Engineering, Newcastle University, Newcastle, England Thomas P. Curtis The Cytryn Lab, Microbial Agroecology, Volcani Center, Agricultural Research Organization, Rishon Lezion, Israel Eddie Cytryn INGEBI-CONICET, University of Buenos Aires, Buenos Aires, Argentina Leonardo Erijman Department of Biochemistry and Microbial Genetics, Biological Research Institute “Clemente Estable”, Montevideo, Uruguay Claudia Etchebehere NIREAS-International Water Research Center, University of Cyprus, Nicosia, Cyprus Despo Fatta-Kassinos Environmental Engineering, McGill University, Montreal, QC, Canada Dominic Frigon School of Microbiology, Universidad de Antioquia, Medellín, Colombia Maria Carolina Garcia-Chaves School of Civil and Environmental Engineering, Cornell University, Ithaca, NY, USA April Z. Gu Water Chemistry and Water Technology and DVGW Research Laboratories, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany Harald Horn David Jenkins & Associates, Inc, Kensington, CA, USA David Jenkins Institute for Water Quality and Resource Management, TU Wien, Vienna, Austria Norbert Kreuzinger Water Innovation and Research Centre, University of Bath, Bath, England Ana Lanham Singapore Centre of Environmental Life Sciences Engineering (SCELSE) Nanyang Technological University, Singapore, Singapore Yingyu Law Water Desalination and Reuse Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia TorOve Leiknes Process Engineering in Urban Water Management, ETH Zürich, Zürich, Switzerland Eberhard Morgenroth Department of Biology, Warsaw University of Technology, Warsaw, Poland Adam Muszyński Environmental Microbial Genetics Lab, La Trobe University, Melbourne, VIC, Australia Steve Petrovski Technologies and Evaluation Area, Catalan Institute for Water Research, ICRA, Girona, Spain Maite Pijuan VA Tech Wabag Ltd, Chennai, India Suraj Babu Pillai Biochemical Engineering Group, Universidade Nova de Lisboa, Lisboa, Portugal Maria A. M. Reis State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China Qi Rong Water Research Institute IRSA - National Research Council (CNR), Rome, Italy Simona Rossetti La Trobe University, Melbourne, VIC, Australia Robert Seviour Department of Civil and Environmental Engineering, University of Massachusetts Amherst, Amherst, MA, USA Nick Tooker Kemira Oyj, Espoo R&D Center, Espo, Finland Pirjo Vainio Environmental Biotechnology, TU Delft, Delft, The Netherlands Mark van Loosdrecht VA Tech Wabag, Philippines Inc., Makati City, Philippines R. Vikraman Department of Water Technology and Environmental Engineering, University of Chemistry and Technology, Prague, Czech Republic Jiří Wanner Environmental Life Science Engineering, TU Delft, Delft, The Netherlands David Weissbrodt School of Environment, Tsinghua University, Beijing, China Xianghua Wen Environmental Biotechnology Lab, Department of Civil Engineering, The University of Hong Kong, Hong Kong, Hong Kong Tong Zhang Authors Morten Kam Dahl Dueholm View author publications You can also search for this author in PubMed Google Scholar Marta Nierychlo View author publications You can also search for this author in PubMed Google Scholar Kasper Skytte Andersen View author publications You can also search for this author in PubMed Google Scholar Vibeke Rudkjøbing View author publications You can also search for this author in PubMed Google Scholar Simon Knutsson View author publications You can also search for this author in PubMed Google Scholar Mads Albertsen View author publications You can also search for this author in PubMed Google Scholar Per Halkjær Nielsen View author publications You can also search for this author in PubMed Google Scholar Consortia MiDAS Global Consortium Sonia Arriaga , Rune Bakke , Nico Boon , Faizal Bux , Magnus Christensson , Adeline Seak May Chua , Thomas P. Curtis , Eddie Cytryn , Leonardo Erijman , Claudia Etchebehere , Despo Fatta-Kassinos , Dominic Frigon , Maria Carolina Garcia-Chaves , April Z. Gu , Harald Horn , David Jenkins , Norbert Kreuzinger , Sheena Kumari , Ana Lanham , Yingyu Law , TorOve Leiknes , Eberhard Morgenroth , Adam Muszyński , Steve Petrovski , Maite Pijuan , Suraj Babu Pillai , Maria A. M. Reis , Qi Rong , Simona Rossetti , Robert Seviour , Nick Tooker , Pirjo Vainio , Mark van Loosdrecht , R. Vikraman , Jiří Wanner , David Weissbrodt , Xianghua Wen , Tong Zhang & Per H. Nielsen Corresponding authors Correspondence to Morten Kam Dahl Dueholm or Per Halkjær Nielsen .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.066
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.078
Threshold uncertainty score0.262

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.066
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0040.004
Science and technology studies0.0040.002
Scholarly communication0.0050.003
Open science0.0030.003
Research integrity0.0040.010
Insufficient payload (model declined to judge)0.0780.063

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.066
GPT teacher head0.317
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations10
Published2022
Admission routes1
Has abstractyes

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