MétaCan
Menu
Back to cohort
Record W4285726752 · doi:10.21203/rs.3.rs-1860298/v1

Infectious side effects of baricitinib: a big data analysis based on VigiBase

2022· preprint· en· W4285726752 on OpenAlexaff
Naim Mahroum, Mehmet Fatih Özkan, Tunahan Abali, Mesut Yılmaz, Nicola Luigi Bragazzi

Bibliographic record

VenueResearch Square · 2022
Typepreprint
Languageen
FieldMedicine
TopicCytokine Signaling Pathways and Interactions
Canadian institutionsYork University
Fundersnot available
KeywordsMedicineRheumatoid arthritisJanus kinaseSide effect (computer science)Immune systemTocilizumabImmunologyCoronavirus disease 2019 (COVID-19)CytokineInternal medicineInfectious disease (medical specialty)

Abstract

fetched live from OpenAlex

Abstract Background and aim : baricitinib is an inhibitor of Janus-associated kinase (JAK) subtypes 1 and 2 with various effects on intracellular signaling pathways. Approved for rheumatoid arthritis (RA), and recently used for severe COVID-19, the prevalence of infections associated with baricitinib treatment has not been widely reported. We aimed to analyze the prevalence of infectious side effects in patients treated with baricitinib. Methods: using the WHO global pharmacovigilance database (VigiBase), we carried out an extensive data analysis of approximately 300 patients treated with baricitinib. The prevalence of infectious side effects was our main focus. Patients treated with baricitinib for the indication of severe COVID-19 were excluded. Results : the most prevalent infectious side effect of baricitinib was oral herpes (IC025 of 4.36) and herpes zoster infection (IC025 of 4.159). On the contrary, gastrointestinal viral infections, infectious pleural effusions and various viral pneumonias had low prevalence rates (IC025 values of 0.173; 0.093; and 0.188, respectively). Conclusion: based on a big data analysis, baricitinib was associated with infectious complications where oral herpes and herpes zoster infections shown to be more prevalent than previously reported. The immunomodulatory effect of baricitinib including cytokine effects on immune cells and the inhibition of numerous growth factors and cytokines such as IL-2, suppressing both innate and adaptive immune responses, are the most comprehensive mechanisms behind such side effects. Given the clinical indications for baricitinib (RA) and the current use in severe COVID-19, cautious approach should be taken before introducing baricitinib particularly in immunosuppressed patients.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.005
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity, Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.297
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.005
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.003
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.002
Research integrity0.0000.003
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.144
GPT teacher head0.445
Teacher spread0.302 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

Explore more

Same venueResearch SquareSame topicCytokine Signaling Pathways and InteractionsFrench-language works237,207